hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-16470236/chunk_1/iprscan-20080806-16470236.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ae00022 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 616.7 8.2e-181 5 SM00180 144.6 1e-38 4 SM00281 87.8 1.3e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00281 1/1 1 99 [. 1 144 [] 87.8 1.3e-21 SM00180 1/4 115 152 .. 1 42 [] 4.4 3.8 SM00180 2/4 155 201 .. 1 42 [] 55.6 6.2e-12 SM00180 3/4 204 259 .. 1 42 [] 38.1 1.2e-06 SM00180 4/4 262 306 .. 1 42 [] 46.5 3.5e-09 SM00282 1/5 901 1046 .. 1 137 [] 100.7 1.7e-25 SM00282 2/5 1095 1235 .. 1 137 [] 124.4 1.3e-32 SM00282 3/5 1277 1423 .. 1 137 [] 115.9 4.6e-30 SM00282 4/5 1516 1649 .. 1 137 [] 142.4 4.9e-38 SM00282 5/5 1691 1827 .. 1 137 [] 133.4 2.5e-35 Alignments of top-scoring domains: SM00281: domain 1 of 1, from 1 to 99: score 87.8, E = 1.3e-21 *->daepvYWkaPeqFLQGDkvtSYGGkLkYtlsyegregevdgntlsrq g + ++ ae00022 1 ----------------------------------------GFSTYN- 6 DvpDViLeGnd.ngirlshralvaqgpplPdeettvevrfrEenwqyfgs p+Vi++G+++++ r+++r ++++pl +++t++e+++ E++w+y+g+ ae00022 7 --PQVIIRGGTpTHARIIVR---HMAAPLIGQLTRHEIEMTEKEWKYYGD 51 ...sgqPvtReelFmmvLadLdailIRATyYseqqlasyrLsdVsLevAv +++++++vtRe++ +++L+d+++ilI+AT Y++ +++s r+s++s+evA+ ae00022 52 dprVHRTVTREDF-LDILYDIHYILIKAT-YGNFMRQS-RISEISMEVAE 98 p<-* + ae00022 99 Q 99 SM00180: domain 1 of 4, from 115 to 152: score 4.4, E = 3.8 *->CdCnlpppvGCdptGqClnCkpnttGGrrCdderCapGyy....... CdC+ l ++ G C+ C+pG+y+ +++++ ae00022 115 CDCP-------------L----GYSG-LSCE--ACLPGFYrlrsqpg 141 .........gC<-* +++++++ ++C ae00022 142 grtpgptlgTC 152 SM00180: domain 2 of 4, from 155 to 201: score 55.6, E = 6.2e-12 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. C+Cn G+++ Cdp+t C+nC+++t+G + C+ rCa Gyy+ ae00022 155 CQCN-----GhsslCDPeTSICQNCQHHTAG-DFCE--RCALGYYgi 193 ......gC<-* ++ +++C ae00022 194 vkglpnDC 201 SM00180: domain 3 of 4, from 204 to 259: score 38.1, E = 1.2e-06 *->CdCnl.pppvG....Cdp....tGqClnCkpnttGGrrCdderCapG C C+l +++ + +++C ++ ++ +C +C +++G + C+ rCapG ae00022 204 CACPLiSSSNNfspsCVAegldDYRCTACPRGYEG-QYCE--RCAPG 247 yy........gC<-* y +++++++++C ae00022 248 YTgspgnpggSC 259 SM00180: domain 4 of 4, from 262 to 306: score 46.5, E = 3.5e-09 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C+C+ p G+ + +Cdp tG C C+p+ tG r+Cd C++ + + ae00022 262 CECD---PYGslpvpCDPvTGFCT-CRPGATG-RKCD--GCKHWHAr 301 ...gC<-* ++ +C ae00022 302 egwEC 306 SM00282: domain 1 of 5, from 901 to 1046: score 100.7, E = 1.7e-25 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + ++i + ++T ++ lL+y+g+ + dfla+e++ G++ + ae00022 901 SyNNIVVNVKTAVADNLLFYLGsakFIDFLAIEMR------KGKVSF 941 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +d Gs g++r+++++ +++D W+r++++r+gr++t+sV + ae00022 942 LWDVGS----GVGRVEYPD---LTIDDSYWYRIVASRTGRNGTISVRAld 984 gnpvsges...........t.LdldkeesgplylGGlPe......lpvsp g +s + ++++++++++ t Ld+d +++l++GGl + ++ + + ae00022 985 GPKASIVPsthhstsppgyTiLDVDA--NAMLFVGGLTGklkkadAVRVI 1032 gFrGCirnlrvngk<-* F+GC+ + ++++k ae00022 1033 TFTGCMGETYFDNK 1046 SM00282: domain 2 of 5, from 1095 to 1235: score 124.4, E = 1.3e-32 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + +++ f FrT+s+++lL+y+++++ df+++eL dG++++ ae00022 1095 NiSTVMFKFRTFSSSALLMYLAtrdLRDFMSVELT------DGHIKV 1135 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +ydlGs g a++ s+ + nDG+W + +++r ++++++s+ + + ae00022 1136 SYDLGS----GMASVVSN----QNHNDGKWKSFTLSRIQKQANISIVDid 1177 ...gnpvsges....t.LdldkeesgplylGGlPe......lpvspgFrG +++++ + ++s++++ +Ldl+ ++++y+GGlP ++ ++ ++ + ++G ae00022 1178 tnqEENIATSSsgnnFgLDLKA--DDKIYFGGLPTlrnlrpEVNLKKYSG 1225 Cirnlrvngk<-* C++++ + + ae00022 1226 CLKDIEISRT 1235 SM00282: domain 3 of 5, from 1277 to 1423: score 115.9, E = 4.6e-30 *->t.lsisfsFrTtspnGlLlyag..............ggdflaleLvl +++i +sF T ++G++l +++++ +++++++++g ++a+ L+ ae00022 1277 VgTEINLSFSTKNESGIILLGSggtpapprrkrrqtGQAYYAILLN- 1322 EDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsverng +Grl++++++G++ t++++++++++ + ++DG+ H+V+ver++ ae00022 1323 -----RGRLEVHLSTGAR-TMRKIVIRPEP---NLFHDGREHSVHVERTR 1363 rsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe......lpv + t++VD +n+ ++ + + +++++++ +l++GG+P++ ++++l + ae00022 1364 GIFTVQVD-ENRRYMQNltveQpIEVK-----KLFVGGAPPefqpspLRN 1407 spgFrGCirnlrvngk<-* p+F GCi nl++n++ ae00022 1408 IPPFEGCIWNLVINSV 1423 SM00282: domain 4 of 5, from 1516 to 1649: score 142.4, E = 4.9e-38 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl ++l+i++++rT++++GlL+y+++ ++ df +++L+ +G +++ ae00022 1516 NrLTIELEVRTEAESGLLFYMArinHADFATVQLR------NGLPYF 1556 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn +ydlGs g ++++ + t++nDGqWH++++ r+++++ L+VD g+ ae00022 1557 SYDLGS----GDTHTMIP----TKINDGQWHKIKIMRSKQEGILYVD-GA 1597 pvsges....t.LdldkeesgplylGGlPe.......lpvspgFrGCirn + ++ s+++ + Ld+ g+ly+GGlP + ++++ +pv+ + +GC+rn ae00022 1598 SNRTISpkkaDiLDVV----GMLYVGGLPInyttrriGPVTYSIDGCVRN 1643 lrvngk<-* l + + ae00022 1644 LHMAEA 1649 SM00282: domain 5 of 5, from 1691 to 1827: score 133.4, E = 2.5e-35 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr +l ++f+FrTt ++G+Ll +++++ d + +e++ d +l+++ ae00022 1691 LdLLVEFEFRTTTTTGVLLGISsqKMDGMGIEMI------DEKLMFH 1731 ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp +d+G+ g+++ +d p +l+DGqWH+V++ +++++L+VD gn+ ae00022 1732 VDNGA----GRFTAVYDAGVPGHLCDGQWHKVTANKIKHRIELTVD-GNQ 1776 vsges.....t.LdldkeesgplylGGlPe......lpvspgFrGCirnl v++ s+++ +t+ d++ +p+++GG P++ ++ +l++s +FrGCir+l ae00022 1777 VEAQSpnpasTsADTN----DPVFVGGFPDdlkqfgLTTSIPFRGCIRSL 1822 rvngk<-* ++ ae00022 1823 KLTKG 1827 //