hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-16592863/chunk_1/iprscan-20080806-16592863.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af00683 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 675.7 3.4e-200 1 PF01403.10.fs Sema domain 673.7 1.3e-199 1 PF00090.9.fs Thrombospondin type 1 domain 221.2 6e-66 7 PF00090.9.ls Thrombospondin type 1 domain 224.5 2.1e-64 5 PF01437.15.fs Plexin repeat 61.3 1.8e-19 1 PF01437.15.ls Plexin repeat 63.0 8.8e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.ls 1/1 78 488 .. 1 490 [] 675.7 3.4e-200 PF01403.10.fs 1/1 78 488 .. 1 490 [] 673.7 1.3e-199 PF01437.15.fs 1/1 506 553 .. 1 63 [] 61.3 1.8e-19 PF01437.15.ls 1/1 506 553 .. 1 63 [] 63.0 8.8e-16 PF00090.9.ls 1/5 619 670 .. 1 55 [] 60.2 6.1e-15 PF00090.9.fs 2/7 619 670 .. 1 55 [] 58.3 6.7e-17 PF00090.9.ls 2/5 677 721 .. 1 55 [] 29.6 1e-05 PF00090.9.fs 3/7 677 721 .. 1 55 [] 27.8 1e-07 PF00090.9.ls 3/5 808 858 .. 1 55 [] 52.6 1.2e-12 PF00090.9.fs 5/7 808 858 .. 1 55 [] 50.7 1.3e-14 PF00090.9.ls 4/5 865 915 .. 1 55 [] 53.4 6.9e-13 PF00090.9.fs 6/7 865 915 .. 1 55 [] 51.5 7.4e-15 PF00090.9.fs 7/7 920 963 .. 1 53 [. 28.9 4.8e-08 PF00090.9.ls 5/5 920 965 .. 1 55 [] 28.7 2e-05 Alignments of top-scoring domains: PF01403.10.ls: domain 1 of 1, from 78 to 488: score 675.7, E = 3.4e-200 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek f+ l++d+ + L VGArN++++L ledls++ q+++W+++ e++ af00683 78 FSQLTFDPGQKELVVGARNYLFRLQLEDLSLI--QAVEWECD--EAT 120 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +++C++kGks ++eCqN+irVL++ +d +L++CGTnaF PvCt + l af00683 121 KKACYSKGKS----KEECQNYIRVLLVGGD-RLFTCGTNAFTPVCTNRSL 165 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL ++ +++ ++ ++sG++rCPy+P+hnst++l+ g geL af00683 166 SN-------------LTE-IHDQISGMARCPYSPQHNSTALLTAG--GEL 199 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++t++D F+GrdpaI+Rslg +plrT q++skwlnePnFV+sy af00683 200 YAATAMD------FPGRDPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSY 243 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +i+ ++ YFFFrE+ave++ cgk+++sR aRvCknD GGr++l af00683 244 DIG-------NFTYFFFRENAVEHD--CGKTVFSRAARVCKNDIGGRFLL 284 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs e ++WTTF+KARLnCS+pG ++p fy+NeLQ++f lp+ af00683 285 E-DTWTTFMKARLNCSRPG--EVP-FYYNELQSTFFLPE----------- 319 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg d +iYG+Ftt++nsia+ SAVC+F++s+I+q+F Gpfk+q E+ af00683 320 -LD-LIYGIFTTNVNSIAA----SAVCVFNLSAIAQAF-SGPFKYQ--EN 360 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm ++s+wlpy++ P P +qC + ++g +y +l++++l+++++ Lm af00683 361 SRSAWLPYPN---PNPH-FQCGTVDQG-LYV---NLTERNLQDAQKFILM 402 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +evv+P++++P f+++++ r+ ++aVd V++++ l+++++l Td Gt af00683 403 HEVVQPVTTVPSFMEDNS--RFSHVAVD-VVQGRE-ALVHIIYLATDYGT 448 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* ++K +v l + ss++ +lee+++f++ r eP+++l+i+++q af00683 449 IKKVRVPLNQTSSsC----LLEEIELFPERRREPIRSLQILHSQ 488 PF01403.10.fs: domain 1 of 1, from 78 to 488: score 673.7, E = 1.3e-199 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek f+ l++d+ + L VGArN++++L ledls++ q+++W+++ e++ af00683 78 FSQLTFDPGQKELVVGARNYLFRLQLEDLSLI--QAVEWECD--EAT 120 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +++C++kGks ++eCqN+irVL++ +d +L++CGTnaF PvCt + l af00683 121 KKACYSKGKS----KEECQNYIRVLLVGGD-RLFTCGTNAFTPVCTNRSL 165 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL ++ +++ ++ ++sG++rCPy+P+hnst++l+ g geL af00683 166 SN-------------LTE-IHDQISGMARCPYSPQHNSTALLTAG--GEL 199 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++t++D F+GrdpaI+Rslg +plrT q++skwlnePnFV+sy af00683 200 YAATAMD------FPGRDPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSY 243 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +i+ ++ YFFFrE+ave++ cgk+++sR aRvCknD GGr++l af00683 244 DIG-------NFTYFFFRENAVEHD--CGKTVFSRAARVCKNDIGGRFLL 284 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs e ++WTTF+KARLnCS+pG ++p fy+NeLQ++f lp+ af00683 285 E-DTWTTFMKARLNCSRPG--EVP-FYYNELQSTFFLPE----------- 319 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg d +iYG+Ftt++nsia+ SAVC+F++s+I+q+F Gpfk+q E+ af00683 320 -LD-LIYGIFTTNVNSIAA----SAVCVFNLSAIAQAF-SGPFKYQ--EN 360 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm ++s+wlpy++ P P +qC + ++g +y +l++++l+++++ Lm af00683 361 SRSAWLPYPN---PNPH-FQCGTVDQG-LYV---NLTERNLQDAQKFILM 402 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +evv+P++++P f+++++ r+ ++aVd V++++ l+++++l Td Gt af00683 403 HEVVQPVTTVPSFMEDNS--RFSHVAVD-VVQGRE-ALVHIIYLATDYGT 448 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* ++K +v l + ss++ +lee+++f++ r eP+++l+i+++q af00683 449 IKKVRVPLNQTSSsC----LLEEIELFPERRREPIRSLQILHSQ 488 PF01437.15.fs: domain 1 of 1, from 506 to 553: score 61.3, E = 1.8e-19 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep +C+ y++ s C++a+dp yCgW++ +++Ct+++ e+ + + af00683 506 RCQFYRTRSTCIGAQDP-YCGWDVVMKKCTSLE-------ESLSMT- 543 endqwldwswssskCp<-* +w++s s Cp af00683 544 ------QWEQSISACP 553 PF01437.15.ls: domain 1 of 1, from 506 to 553: score 63.0, E = 8.8e-16 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep +C+ y++ s C++a+dp yCgW++ +++Ct+++ e+ + + af00683 506 RCQFYRTRSTCIGAQDP-YCGWDVVMKKCTSLE-------ESLSMT- 543 endqwldwswssskCp<-* +w++s s Cp af00683 544 ------QWEQSISACP 553 PF00090.9.ls: domain 1 of 5, from 619 to 670: score 60.2, E = 6.1e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW+ WSpCS TCG G ++RqR+c +p P+ +gg C+g+ +e + af00683 619 TPWTSWSPCSTTCGIGFQVRQRSCSNPTPR-HGGRVCVGQNRE--ER 662 aCdmmdkC<-* C++ C af00683 663 YCNEHLLC 670 PF00090.9.fs: domain 2 of 7, from 619 to 670: score 58.3, E = 6.7e-17 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW+ WSpCS TCG G ++RqR+c +p P+ +gg C+g+ +e + af00683 619 TPWTSWSPCSTTCGIGFQVRQRSCSNPTPR-HGGRVCVGQNRE--ER 662 aCdmmdkC<-* C++ C af00683 663 YCNEHLLC 670 PF00090.9.ls: domain 2 of 5, from 677 to 721: score 29.6, E = 1e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W++W+ C+ CG+Gi+ R+R c + g++C g +e + af00683 677 TGWGPWERCTAQCGGGIQARRRICEN-------GPDCAGCNVE--YQ 714 aCdmmdkC<-* C + +C af00683 715 SC-NTNPC 721 PF00090.9.fs: domain 3 of 7, from 677 to 721: score 27.8, E = 1e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W++W+ C+ CG+Gi+ R+R c + g++C g +e + af00683 677 TGWGPWERCTAQCGGGIQARRRICEN-------GPDCAGCNVE--YQ 714 aCdmmdkC<-* C + +C af00683 715 SC-NTNPC 721 PF00090.9.ls: domain 3 of 5, from 808 to 858: score 52.6, E = 1.2e-12 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s W+ WS+CS C+ Gir R+Rvcn+p+P+ +gg pC g+ e + af00683 808 SAWTSWSQCSRDCSRGIRNRKRVCNNPEPK-YGGMPCLGPSLE--YQ 851 aCdmmdkC<-* C + +C af00683 852 EC-NILPC 858 PF00090.9.fs: domain 5 of 7, from 808 to 858: score 50.7, E = 1.3e-14 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s W+ WS+CS C+ Gir R+Rvcn+p+P+ +gg pC g+ e + af00683 808 SAWTSWSQCSRDCSRGIRNRKRVCNNPEPK-YGGMPCLGPSLE--YQ 851 aCdmmdkC<-* C + +C af00683 852 EC-NILPC 858 PF00090.9.ls: domain 4 of 5, from 865 to 915: score 53.4, E = 6.9e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s Ws+W+ CS TCG+G+ +R+R+c +paP +gg C g ++e af00683 865 SCWSPWTKCSATCGGGHYMRTRSCSNPAPA-YGGDICLGLHTE--EA 908 aCdmmdkC<-* C + ++C af00683 909 LC-NTQPC 915 PF00090.9.fs: domain 6 of 7, from 865 to 915: score 51.5, E = 7.4e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s Ws+W+ CS TCG+G+ +R+R+c +paP +gg C g ++e af00683 865 SCWSPWTKCSATCGGGHYMRTRSCSNPAPA-YGGDICLGLHTE--EA 908 aCdmmdkC<-* C + ++C af00683 909 LC-NTQPC 915 PF00090.9.fs: domain 7 of 7, from 920 to 963: score 28.9, E = 4.8e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws WS+C +G+++R R c +P g++C g+++e ++ af00683 920 SEWSDWSECE---ASGVQVRARQCILLFPM---GSQCSGNTTE--SR 958 aCdmmd<-* +C d af00683 959 PC-VFD 963 PF00090.9.ls: domain 5 of 5, from 920 to 965: score 28.7, E = 2e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws WS+C +G+++R R c +P g++C g+++e ++ af00683 920 SEWSDWSECE---ASGVQVRARQCILLFPM---GSQCSGNTTE--SR 958 aCdmmdkC<-* +C d af00683 959 PC-VFDSN 965 //