hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-16592863/chunk_1/iprscan-20080806-16592863.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af00683 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 584.9 3e-171 1 SM00209 307.7 8.3e-88 6 SM00423 55.7 6.1e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 78 488 .. 1 532 [] 584.9 3e-171 SM00423 1/1 506 553 .. 1 56 [] 55.7 6.1e-12 SM00209 1/6 563 617 .. 1 66 [] 16.9 0.14 SM00209 2/6 618 671 .. 1 66 [] 66.8 2.8e-15 SM00209 3/6 676 722 .. 1 66 [] 55.9 5.2e-12 SM00209 4/6 807 859 .. 1 66 [] 68.6 7.7e-16 SM00209 5/6 864 916 .. 1 66 [] 73.9 2e-17 SM00209 6/6 919 966 .. 1 66 [] 25.6 0.0069 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 78 to 488: score 584.9, E = 3e-171 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps f+ l +d+++ +l VGArN++++L l++lsl +++ +w+ af00683 78 FSQLTFDPGQK--ELVVGARNYLFRLQLEDLSL------IQAVEWEC 116 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv e+ +++ C++kgk s ++eC+NyirvLlv ++L++ af00683 117 DEA------TKKACYSKGK----S-KEECQNYIRVLLVGG-----DRLFT 150 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CGTnaf P +C+ + l++l+ e+ +++sg++ af00683 151 CGTNAFTP--VCTNRSLSNLT-------------------EIHDQISGMA 179 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs +CPy+P+++st+++ g geLY++t++df+g +dp+i+Rs af00683 180 RCPYSPQHNSTALLTAG-----GELYAATAMDFPG-------RDPAIYRS 217 lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF lg ++lrt +y+skw lnepnFV++++i g+f YF af00683 218 LG--------ILPPLRTAQYNSKW---LNEPNFVSSYDI-----GNFTYF 251 FFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKarL FFrE+ave+ dc+ k+v+sR ARvCknD GG++lL++ Wt+F+KarL af00683 252 FFRENAVEH---DCG--KTVFSRAARVCKNDIGGRFLLEDTWTTFMKARL 296 nCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgqq nCs p g+v+ fy+neLQ+ f+lp+ d++Yg+F+ af00683 297 NCSRP--GEVP-FYYNELQSTFFLPE----L-------DLIYGIFT---- 328 tssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnkv t++ n+i SAVC+F+l+ I ++F+ Gpfk +e+++sawlp++ n+ af00683 329 TNV----NSIAASAVCVFNLSAIAQAFS-GPFKYQENSRSAWLPYP-NPN 372 PyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgrP P++++Gt ++++ +l++++l+ +++ Lm+e+v+P+t +P af00683 373 PHFQCGTV---------DQGLYVNLTERNLQDAQKFILMHEVVQPVTTVP 413 llvktgtdyrlTsiaVdrvrgldGgkn.eytVlFlGTsdGrvlKvvvsrs ++++ + r+ ++aVd+v+g + +++++l T+ G+++Kv+v+ + af00683 414 SFMED--NSRFSHVAVDVVQGR----EaLVHIIYLATDYGTIKKVRVPLN 457 ssssssaglesvlleelqvfppgs.epirdmvlsskk<-* + ++s+llee+++fp+ ++epir++++ +++ af00683 458 QT------SSSCLLEEIELFPERRrEPIRSLQILHSQ 488 SM00423: domain 1 of 1, from 506 to 553: score 55.7, E = 6.1e-12 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw rC+ y ++ s C++a+dpy CgW++ ++Ct++e+ ++++++q++ af00683 506 RCQFY--RTRSTCIGAQDPY-CGWDVVMKKCTSLEESLSMTQWEQSI 549 ssgpssqCp<-* s Cp af00683 550 S-----ACP 553 SM00209: domain 1 of 6, from 563 to 617: score 16.9, E = 0.14 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + Ws+W+pC+ t G+ ++ RtR c+ p+p q+gg af00683 563 FGVWSPWTPCT-HTDGSAVGS--CLCRTR-----SCDSPAP--QCGG 599 epCs....EtrpCntqpnLqpCp<-* ++C++++ E C+ + af00683 600 WQCEgpgmEIANCSR-----NGG 617 SM00209: domain 2 of 6, from 618 to 671: score 66.8, E = 2.8e-15 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w++W++WSpCS tCG G +++R+Rs c +p p + gg af00683 618 WTPWTSWSPCS-TTCGIG-----FQVRQRS----CSNPTP---RHGG 651 epCs....EtrpCntqpnLqpCp<-* + C ++++E r Cn++ Cp af00683 652 RVCVgqnrEERYCNEHL---LCP 671 SM00209: domain 3 of 6, from 676 to 722: score 55.9, E = 5.2e-12 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w+ W++W C+ ++CGgG ++ R+R c ++ ++ af00683 676 WTGWGPWERCT-AQCGGG-----IQARRRI----CENG------PDC 706 epCs.EtrpCntqpnLqpCp<-* + C E++ Cnt+ pCp af00683 707 AGCNvEYQSCNTN----PCP 722 SM00209: domain 4 of 6, from 807 to 859: score 68.6, E = 7.7e-16 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ws+W++WS+CS + C +G +r R+R +c++p+p + gg af00683 807 WSAWTSWSQCS-RDCSRG-----IRNRKR-----VCNNPEP--KYGG 840 epCs....EtrpCntqpnLqpCp<-* pC +++ E+++Cn pCp af00683 841 MPCLgpslEYQECNIL----PCP 859 SM00209: domain 5 of 6, from 864 to 916: score 73.9, E = 2e-17 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ws+Ws+W+ CS +tCGgG + +RtRs c +p+p gg af00683 864 WSCWSPWTKCS-ATCGGG-----HYMRTRS----CSNPAP---AYGG 897 epCs....EtrpCntqpnLqpCp<-* C + ++E Cntq pCp af00683 898 DICLglhtEEALCNTQ----PCP 916 SM00209: domain 6 of 6, from 919 to 966: score 25.6, E = 0.0069 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg wseWs+WS+C +G v++R R+ c++ + g af00683 919 WSEWSDWSECE----ASG-----VQVRARQ----CILL-----FPMG 947 epCs....EtrpCntqpnLqpCp<-* ++Cs++++E+rpC + af00683 948 SQCSgnttESRPCVFD----SNF 966 //