hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-16592863/chunk_1/iprscan-20080806-16592863.nocrc
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Query sequence: af00683
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00630 584.9 3e-171 1
SM00209 307.7 8.3e-88 6
SM00423 55.7 6.1e-12 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00630 1/1 78 488 .. 1 532 [] 584.9 3e-171
SM00423 1/1 506 553 .. 1 56 [] 55.7 6.1e-12
SM00209 1/6 563 617 .. 1 66 [] 16.9 0.14
SM00209 2/6 618 671 .. 1 66 [] 66.8 2.8e-15
SM00209 3/6 676 722 .. 1 66 [] 55.9 5.2e-12
SM00209 4/6 807 859 .. 1 66 [] 68.6 7.7e-16
SM00209 5/6 864 916 .. 1 66 [] 73.9 2e-17
SM00209 6/6 919 966 .. 1 66 [] 25.6 0.0069
Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 78 to 488: score 584.9, E = 3e-171
*->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
f+ l +d+++ +l VGArN++++L l++lsl +++ +w+
af00683 78 FSQLTFDPGQK--ELVVGARNYLFRLQLEDLSL------IQAVEWEC 116
ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
e+ +++ C++kgk s ++eC+NyirvLlv ++L++
af00683 117 DEA------TKKACYSKGK----S-KEECQNYIRVLLVGG-----DRLFT 150
CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
CGTnaf P +C+ + l++l+ e+ +++sg++
af00683 151 CGTNAFTP--VCTNRSLSNLT-------------------EIHDQISGMA 179
kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
+CPy+P+++st+++ g geLY++t++df+g +dp+i+Rs
af00683 180 RCPYSPQHNSTALLTAG-----GELYAATAMDFPG-------RDPAIYRS 217
lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF
lg ++lrt +y+skw lnepnFV++++i g+f YF
af00683 218 LG--------ILPPLRTAQYNSKW---LNEPNFVSSYDI-----GNFTYF 251
FFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKarL
FFrE+ave+ dc+ k+v+sR ARvCknD GG++lL++ Wt+F+KarL
af00683 252 FFRENAVEH---DCG--KTVFSRAARVCKNDIGGRFLLEDTWTTFMKARL 296
nCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgqq
nCs p g+v+ fy+neLQ+ f+lp+ d++Yg+F+
af00683 297 NCSRP--GEVP-FYYNELQSTFFLPE----L-------DLIYGIFT---- 328
tssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnkv
t++ n+i SAVC+F+l+ I ++F+ Gpfk +e+++sawlp++ n+
af00683 329 TNV----NSIAASAVCVFNLSAIAQAFS-GPFKYQENSRSAWLPYP-NPN 372
PyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgrP
P++++Gt ++++ +l++++l+ +++ Lm+e+v+P+t +P
af00683 373 PHFQCGTV---------DQGLYVNLTERNLQDAQKFILMHEVVQPVTTVP 413
llvktgtdyrlTsiaVdrvrgldGgkn.eytVlFlGTsdGrvlKvvvsrs
++++ + r+ ++aVd+v+g + +++++l T+ G+++Kv+v+ +
af00683 414 SFMED--NSRFSHVAVDVVQGR----EaLVHIIYLATDYGTIKKVRVPLN 457
ssssssaglesvlleelqvfppgs.epirdmvlsskk<-*
+ ++s+llee+++fp+ ++epir++++ +++
af00683 458 QT------SSSCLLEEIELFPERRrEPIRSLQILHSQ 488
SM00423: domain 1 of 1, from 506 to 553: score 55.7, E = 6.1e-12
*->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
rC+ y ++ s C++a+dpy CgW++ ++Ct++e+ ++++++q++
af00683 506 RCQFY--RTRSTCIGAQDPY-CGWDVVMKKCTSLEESLSMTQWEQSI 549
ssgpssqCp<-*
s Cp
af00683 550 S-----ACP 553
SM00209: domain 1 of 6, from 563 to 617: score 16.9, E = 0.14
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
+ Ws+W+pC+ t G+ ++ RtR c+ p+p q+gg
af00683 563 FGVWSPWTPCT-HTDGSAVGS--CLCRTR-----SCDSPAP--QCGG 599
epCs....EtrpCntqpnLqpCp<-*
++C++++ E C+ +
af00683 600 WQCEgpgmEIANCSR-----NGG 617
SM00209: domain 2 of 6, from 618 to 671: score 66.8, E = 2.8e-15
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
w++W++WSpCS tCG G +++R+Rs c +p p + gg
af00683 618 WTPWTSWSPCS-TTCGIG-----FQVRQRS----CSNPTP---RHGG 651
epCs....EtrpCntqpnLqpCp<-*
+ C ++++E r Cn++ Cp
af00683 652 RVCVgqnrEERYCNEHL---LCP 671
SM00209: domain 3 of 6, from 676 to 722: score 55.9, E = 5.2e-12
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
w+ W++W C+ ++CGgG ++ R+R c ++ ++
af00683 676 WTGWGPWERCT-AQCGGG-----IQARRRI----CENG------PDC 706
epCs.EtrpCntqpnLqpCp<-*
+ C E++ Cnt+ pCp
af00683 707 AGCNvEYQSCNTN----PCP 722
SM00209: domain 4 of 6, from 807 to 859: score 68.6, E = 7.7e-16
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
ws+W++WS+CS + C +G +r R+R +c++p+p + gg
af00683 807 WSAWTSWSQCS-RDCSRG-----IRNRKR-----VCNNPEP--KYGG 840
epCs....EtrpCntqpnLqpCp<-*
pC +++ E+++Cn pCp
af00683 841 MPCLgpslEYQECNIL----PCP 859
SM00209: domain 5 of 6, from 864 to 916: score 73.9, E = 2e-17
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
ws+Ws+W+ CS +tCGgG + +RtRs c +p+p gg
af00683 864 WSCWSPWTKCS-ATCGGG-----HYMRTRS----CSNPAP---AYGG 897
epCs....EtrpCntqpnLqpCp<-*
C + ++E Cntq pCp
af00683 898 DICLglhtEEALCNTQ----PCP 916
SM00209: domain 6 of 6, from 919 to 966: score 25.6, E = 0.0069
*->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
wseWs+WS+C +G v++R R+ c++ + g
af00683 919 WSEWSDWSECE----ASG-----VQVRARQ----CILL-----FPMG 947
epCs....EtrpCntqpnLqpCp<-*
++Cs++++E+rpC +
af00683 948 SQCSgnttESRPCVFD----SNF 966
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