hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17052508/chunk_1/iprscan-20080806-17052508.nocrc
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Query sequence: af02594
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  220.6    8.8e-65   1
PF00620.17.ls RhoGAP domain                                  222.5    8.7e-64   1
PF00169.19.fs PH domain                                       66.7    7.8e-20   1
PF00169.19.ls PH domain                                       44.8    2.6e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      50   118 ..     1    64 [.    66.7  7.8e-20
PF00169.19.ls   1/1      50   131 ..     1    92 []    44.8  2.6e-10
PF00620.17.fs   1/1     142   296 ..     1   155 []   220.6  8.8e-65
PF00620.17.ls   1/1     142   296 ..     1   155 []   222.5  8.7e-64

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 50 to 118: score 66.7, E = 7.8e-20
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      v k GwL+k+ +  k+w++R+fvL++d+L+yykdk++ kp+g i+L+
     af02594    50    VLKAGWLKKQRsIMKNWQQRWFVLRGDQLFYYKDKDeIKPQGFISLQ 96   

                   giqvtkvpdn...krkncFeir<-*
                   g qvt++p++++++ k+ Fei+   
     af02594    97 GTQVTELPPGpedPGKHLFEIS    118  

PF00169.19.ls: domain 1 of 1, from 50 to 131: score 44.8, E = 2.6e-10
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      v k GwL+k+ +  k+w++R+fvL++d+L+yykdk++ kp+g i+L+
     af02594    50    VLKAGWLKKQRsIMKNWQQRWFVLRGDQLFYYKDKDeIKPQGFISLQ 96   

                   giqvtkvpdn...krkncFeirt..dretlllqaeseeerkeWvkaiqsa
                   g qvt++p++++++ k+ Fei+ +  +                 + +++ 
     af02594    97 GTQVTELPPGpedPGKHLFEISPgiFG-----------------QRLEET 129  

                   ir<-*
                   ++   
     af02594   130 VH    131  

PF00620.17.fs: domain 1 of 1, from 142 to 296: score 220.6, E = 8.8e-65
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      Pl+ve+C++f+++rGL++EG++R +G +  ++ L++ fd+ge +   
     af02594   142    PLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGEKPL-- 186  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefiea.aaksedeeerle
                   +++  dvh+vAslLKl+LReLPeP+++f+ ye+f+ +  + ++de e   
     af02594   187 FDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLSCaQLLTKDEGEGTL 236  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   +l + ++ LP+aN+++Lry++++L +V+++s vNkM+++NLA+vFgP++l
     af02594   237 ELAKQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNIL 286  

                   rppdgd.sad<-*
                   rp+++d+  +   
     af02594   287 RPQVEDpVTI    296  

PF00620.17.ls: domain 1 of 1, from 142 to 296: score 222.5, E = 8.7e-64
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      Pl+ve+C++f+++rGL++EG++R +G +  ++ L++ fd+ge +   
     af02594   142    PLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGEKPL-- 186  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefiea.aaksedeeerle
                   +++  dvh+vAslLKl+LReLPeP+++f+ ye+f+ +  + ++de e   
     af02594   187 FDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLSCaQLLTKDEGEGTL 236  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   +l + ++ LP+aN+++Lry++++L +V+++s vNkM+++NLA+vFgP++l
     af02594   237 ELAKQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNIL 286  

                   rppdgd.sad<-*
                   rp+++d+  +   
     af02594   287 RPQVEDpVTI    296  

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