hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17052508/chunk_1/iprscan-20080806-17052508.nocrc
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Query sequence: af02594
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 227.9    8.7e-64   1
SM00233                                                  40.1      3e-07   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      50   133 ..     1    82 []    40.1    3e-07
SM00324     1/1     139   315 ..     1   193 []   227.9  8.7e-64

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 50 to 133: score 40.1, E = 3e-07
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      v+k GwL+k+ +  ++w++r+fvL++++L+yyk+k++ kp+g+i+L+
     af02594    50    VLKAGWLKKQRsiMkNWQQRWFVLRGDQLFYYKDKdeiKPQGFISLQ 96   

                   gcsvre.p.........cFeivt.drtlllqAeseeereeWvealqsaia
                   g +v+e p+++++++++ Fei+ +                  + l++ ++
     af02594    97 GTQVTElPpgpedpgkhLFEISPgI---------------FGQRLEETVH 131  

                   ka<-*
                   +    
     af02594   132 HE    133  

SM00324: domain 1 of 1, from 139 to 315: score 227.9, E = 8.7e-64
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +  P++ve+C++++++rGl++eG++R +G++  v+ L+++fd+ge++
     af02594   139    RLAPLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGEKp 185  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                                 +++  dvh+vA+lLKlyLReLPeP+++f+ ye+f++
     af02594   186 L-------------FDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLS 222  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   +a+l            +  de e   +l + +s LP+an+++Lry++++L
     af02594   223 CAQL------------LTKDEGEGTLELAKQVSNLPQANYNLLRYICkFL 260  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                    +V+++s vNkM+++NLA+vFgP++lrp+ +++ + +  ++++++++ +l
     af02594   261 DEVQAYSNVNKMSVQNLATVFGPNILRPQvedpvtiMEGTSLVQHLMTVL 310  

                   ienad<-*
                   i+++    
     af02594   311 IRKHS    315  

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