hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-19124583/chunk_1/iprscan-20090617-19124583.nocrc
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Query sequence: af02858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         145.0    1.9e-40   5
PF00096.16.fs Zinc finger, C2H2 type                         135.1    1.7e-37   5
PF00651.21.ls BTB/POZ domain                                 107.0    5.2e-29   1
PF00651.21.fs BTB/POZ domain                                 105.2    7.4e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1     100   203 ..     1   135 []   105.2  7.4e-29
PF00651.21.ls   1/1     100   203 ..     1   135 []   107.0  5.2e-29
PF00096.16.ls   1/5     584   606 ..     1    24 []    26.4  9.1e-05
PF00096.16.fs   1/5     584   606 ..     1    24 []    24.5  7.5e-05
PF00096.16.ls   2/5     612   634 ..     1    24 []    28.9  1.6e-05
PF00096.16.fs   2/5     612   634 ..     1    24 []    27.0  1.8e-05
PF00096.16.fs   3/5     640   662 ..     1    24 []    35.8  1.1e-07
PF00096.16.ls   3/5     640   662 ..     1    24 []    37.8  3.5e-08
PF00096.16.fs   4/5     668   690 ..     1    24 []    26.3  2.7e-05
PF00096.16.ls   4/5     668   690 ..     1    24 []    28.2  2.6e-05
PF00096.16.ls   5/5     721   743 ..     1    24 []    23.6  0.00067

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 100 to 203: score 105.2, E = 7.4e-29
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lne+r++g++cDVt+ +         g +++AH++vLaa Sp+F++ 
     af02858   100    LNEQRNRGHFCDVTVRIH--------GSMLRAHRCVLAAGSPFFQDK 138  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   ++ ++      ++++    i+ + vs ++++ l++f+Y+g l ++     
     af02858   139 LLLGY------SDIE----IP-SVVSVQSVQKLIDFMYSGVLRVS----- 172  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          + + ++L aA + lqi+ ++d C++   ++    
     af02858   173 ------QSEALQILTAA-SILQIKTVIDECTRIVSQNV    203  

PF00651.21.ls: domain 1 of 1, from 100 to 203: score 107.0, E = 5.2e-29
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lne+r++g++cDVt+ +         g +++AH++vLaa Sp+F++ 
     af02858   100    LNEQRNRGHFCDVTVRIH--------GSMLRAHRCVLAAGSPFFQDK 138  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   ++ ++      ++++    i+ + vs ++++ l++f+Y+g l ++     
     af02858   139 LLLGY------SDIE----IP-SVVSVQSVQKLIDFMYSGVLRVS----- 172  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          + + ++L aA + lqi+ ++d C++   ++    
     af02858   173 ------QSEALQILTAA-SILQIKTVIDECTRIVSQNV    203  

PF00096.16.ls: domain 1 of 5, from 584 to 606: score 26.4, E = 9.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  C+k+F+ k n+ +H+ +H   
     af02858   584    YECT-LCNKTFTAKQNYVKHMFVH    606  

PF00096.16.fs: domain 1 of 5, from 584 to 606: score 24.5, E = 7.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  C+k+F+ k n+ +H+ +H   
     af02858   584    YECT-LCNKTFTAKQNYVKHMFVH    606  

PF00096.16.ls: domain 2 of 5, from 612 to 634: score 28.9, E = 1.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C +sFs k+ L +H+ tH   
     af02858   612    HQCS-ICWRSFSLKDYLIKHMVTH    634  

PF00096.16.fs: domain 2 of 5, from 612 to 634: score 27.0, E = 1.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C +sFs k+ L +H+ tH   
     af02858   612    HQCS-ICWRSFSLKDYLIKHMVTH    634  

PF00096.16.fs: domain 3 of 5, from 640 to 662: score 35.8, E = 1.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F++ks+L+ H+r H   
     af02858   640    YQCS-ICNKRFTQKSSLNVHMRLH    662  

PF00096.16.ls: domain 3 of 5, from 640 to 662: score 37.8, E = 3.5e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F++ks+L+ H+r H   
     af02858   640    YQCS-ICNKRFTQKSSLNVHMRLH    662  

PF00096.16.fs: domain 4 of 5, from 668 to 690: score 26.3, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C+k+Fs+k  L+rH   H   
     af02858   668    YECY-ICKKKFSHKTLLERHVALH    690  

PF00096.16.ls: domain 4 of 5, from 668 to 690: score 28.2, E = 2.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C+k+Fs+k  L+rH   H   
     af02858   668    YECY-ICKKKFSHKTLLERHVALH    690  

PF00096.16.ls: domain 5 of 5, from 721 to 743: score 23.6, E = 0.00067
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C  +F + ++++ H+r+H   
     af02858   721    YVCS-VCPAKFDQIEQFNDHMRMH    743  

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