hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-19124583/chunk_1/iprscan-20090617-19124583.nocrc
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Query sequence: af02858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 141.0    1.2e-37   5
SM00225                                                  86.3    3.7e-21   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1     110   203 ..     1   114 []    86.3  3.7e-21
SM00355      1/5     584   606 ..     1    23 []    28.7  0.00082
SM00355      2/5     612   634 ..     1    23 []    26.1   0.0048
SM00355      3/5     640   662 ..     1    23 []    35.2    9e-06
SM00355      4/5     668   690 ..     1    23 []    22.5    0.057
SM00355      5/5     721   743 ..     1    23 []    28.5  0.00092

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 110 to 203: score 86.3, E = 3.7e-21
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+ + g           ++a  H++vLaa    Sp+F++ ++ +
     af02858   110    CDVTVRIHG---------SMLRA--HRCVLAAG---SPFFQDKLLLg 142  

                   ...ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelAd
                    ++ie++      +vs  +++ l++f+Y++ l+++++   +++++L +A+
     af02858   143 ysdIEIPS-----VVSVQSVQKLIDFMYSgVLRVSQS---EALQILTAAS 184  

                   fldSYGqip.lvelCeefllknl<-*
                    l    qi+++++ C+++  +n    
     af02858   185 IL----QIKtVIDECTRIVSQNV    203  

SM00355: domain 1 of 5, from 584 to 606: score 28.7, E = 0.00082
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k+f+ k+++++Hm vH   
     af02858   584    YECTL-CNKTFTAKqNYVKHMFVH    606  

SM00355: domain 2 of 5, from 612 to 634: score 26.1, E = 0.0048
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i C +sfs k+ L++Hm +H   
     af02858   612    HQCSI-CWRSFSLKdYLIKHMVTH    634  

SM00355: domain 3 of 5, from 640 to 662: score 35.2, E = 9e-06
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i C+k+f++k++L+ Hmr H   
     af02858   640    YQCSI-CNKRFTQKsSLNVHMRLH    662  

SM00355: domain 4 of 5, from 668 to 690: score 22.5, E = 0.057
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C i C+k+fs+k+ L+rH+  H   
     af02858   668    YECYI-CKKKFSHKtLLERHVALH    690  

SM00355: domain 5 of 5, from 721 to 743: score 28.5, E = 0.00092
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+ +f + ++++ Hmr+H   
     af02858   721    YVCSV-CPAKFDQIeQFNDHMRMH    743  

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