hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-17120653/chunk_1/iprscan-20080806-17120653.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af03823 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 434.7 4.9e-126 1 SM00429 303.5 1.5e-86 4 SM00423 135.2 7.2e-36 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 140 585 .. 1 532 [] 434.7 4.9e-126 SM00423 1/3 603 653 .. 1 56 [] 49.5 4.3e-10 SM00423 2/3 749 796 .. 1 56 [] 39.6 4.1e-07 SM00423 3/3 897 951 .. 1 56 [] 46.0 5e-09 SM00429 1/4 952 1048 .. 1 111 [] 99.1 5.2e-25 SM00429 2/4 1049 1134 .. 1 111 [] 79.2 4.9e-19 SM00429 3/4 1136 1236 .. 1 111 [] 91.5 1e-22 SM00429 4/4 1238 1333 .. 1 111 [] 33.8 2.4e-05 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 140 to 585: score 434.7, E = 4.9e-126 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps ++hl+++e +g ++yVGA+Nriy+Ls nl+ll+ +vtgpv+d+++ af03823 140 LTHLVVHEQTG--EVYVGAVNRIYKLS-GNLTLLRAHVTGPVEDNEK 183 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv c++ ++++++ C+++++ +dN++++Ll+d++ ++L++ af03823 184 CYP---------PPSVQS---CPHGLGSTDNVNKLLLLDYA---ANRLLA 218 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CG+ ++g+ C++++l+d +++l++++++ke++ls + ++ af03823 219 CGSASQGI---CQFLRLDD----------LFKLGEPHHRKEHYLSSVQEA 255 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs ++++++l + ++g++ L++gt +d + + +++++R+ af03823 256 GSMAGVLIAG--PPGQGQA----KLFVGTPIDGKS-----EYFPTLSSRR 294 lgtt.......qdgfefefhslrttiydskwg.ydlnepnFVyaFeipes l +++++ + ++++ef+s++++i+++++++++ +++++Vy+F + af03823 295 LMANeedadmfGFVYQDEFVSSQLKIPSDTLSkFPAFDIYYVYSFRS--- 341 gdgdfVYFFFrEtaveainr.dcssekavvsRVARvCknDvGGqrlLqkk +fVY+++ + +++ +++d ++e++++s+++R+C +D +k af03823 342 --EQFVYYLTLQLDTQL-TSpDAAGEHFFTSKIVRLCVDD--------PK 380 WtSFLKarLnCsvpgkggvrefyFneLQavfllppGa.LArelgi.esdd ++S+++ ++ C + gv+ ++++Q+++l++pG+ LA++lg e++d af03823 381 FYSYVEFPIGCE---QAGVE---YRLVQDAYLSRPGRaLAHQLGLaEDED 424 vlYgVFsqgqqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpn vl++VF+qgq++ + p + SA+C F+l+ I+++++e++++cy+g af03823 425 VLFTVFAQGQKNRV----KPPKESALCLFTLRAIKEKIKERIQSCYRG-- 468 sawlpvegnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLm ++ ++ +P+ +++ + +++l +d++++++d +++ af03823 469 --EGKLS---LPWLLNKEL----------GCINSPLQIDDDFCGQDFNQP 503 deavpPltgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdG ++++ ++g+Pl+v + d+ lT++a++ +rg tV+F GT +G af03823 504 LGGTVTIEGTPLFVDK--DDGLTAVAAYDYRG-------RTVVFAGTRSG 544 rvlKvvvsrsssssssaglesvlleelqvfppgsepirdmvlsskk<-* r+ K++v+ s+ + g+ ++ +e+++ + gs+++rd+vls+ af03823 545 RIRKILVDLSNPG----GRPALAYESVVAQE-GSPILRDLVLSPNH 585 SM00423: domain 1 of 3, from 603 to 653: score 49.5, E = 4.3e-10 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C qy tsC+ Cl++rdp+ CgWC++++ C+r+ +C ++ + +q af03823 603 SCVQY--TSCELCLGSRDPH-CGWCVLHSICSRRDACERADE-PQRF 645 ssgpssqCp<-* + qC af03823 646 AA-DLLQCV 653 SM00423: domain 2 of 3, from 749 to 796: score 39.6, E = 4.1e-07 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn +Cs++ +sC +C+ + p C+WC++++ Ct+ ++C +g r n af03823 749 NCSVH--QSCLSCVNGSFP--CHWCKYRHVCTHNvADCAFLEG-RVN 790 wssgpssqCp<-* +s Cp af03823 791 VSE----DCP 796 SM00423: domain 3 of 3, from 897 to 951: score 46.0, E = 5e-09 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C +++ sC+ Cl a+++++CgWC+ e+rC+ +++C ++ ++w af03823 897 KCPALR-ESCGLCLKADPRFECGWCVAERRCSLRHHCAADTP--ASW 940 ssg..pssqCp<-* ++++++ss C+ af03823 941 MHArhGSSRCT 951 SM00429: domain 1 of 4, from 952 to 1048: score 99.1, E = 5.2e-25 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe dP+I+++sP++Gp++GGt r+t++G nL+ ++++v+ v vg + af03823 952 DPKILKLSPETGPRQGGT-RLTITGENLGLRFEDVRLGVRVG----K 993 vpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdng v C+++ s+++ s+++ivC+++ ++ + +++ v+v +v ++ af03823 994 VLCSPVESEYI---SAEQIVCEIGDASS-VRaHDALVEV----CVRDCSP 1035 gvrtelsppspFtYv<-* ++r+ ++p++Ft+v af03823 1036 HYRA--LSPKRFTFV 1048 SM00429: domain 2 of 4, from 1049 to 1134: score 79.2, E = 4.9e-19 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe P+++r+sPs+GplsGGt +i ++G++L++ gs+v v+vg + af03823 1049 TPTFYRVSPSRGPLSGGT-WIGIEGSHLNA-GSDVAVSVG------G 1087 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg +pC+f+++ +s +i+C tPp+ +pgs+p+ + + + af03823 1088 RPCSFSWR------NSREIRCLTPPGQ----SPGSAPI----IINI---N 1120 vrtel.sppspFtYv<-* + + l++p + Y+ af03823 1121 RAQ-LtNPEVKYNYT 1134 SM00429: domain 3 of 4, from 1136 to 1236: score 91.5, E = 1e-22 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW dP+I+ri+P++++ sGGt ++t++G+nL + + ++++r ++gG + af03823 1136 DPTILRIDPEWSINSGGT-LLTVTGTNLAT-VREPRIRAKYGGIeR- 1179 evpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdn e+ C + ++ t++vCr+P+ +n+ +++p ++ ++ e+gf + af03823 1180 ENGCLVYND--------TTMVCRAPSVANPVRsPPELGERPD--ELGFVM 1219 ggvrtel.sppspFtYv<-* ++vr++l +++ +F Y+ af03823 1220 DNVRSLLvLNSTSFLYY 1236 SM00429: domain 4 of 4, from 1238 to 1333: score 33.8, E = 2.4e-05 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW dPv + +sP+ + + l+G+nL + + r+++ + af03823 1238 DPVLEPLSPTGLLELKPSSPLILKGRNLLP-PAPGNSRLNYTVLiG- 1282 evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng ++pCt++ s+t+++C++P ++q + ++v+ ++ e++ + af03823 1283 STPCTLTV-------SETQLLCEAPNLTGQ--HKVTVRAGGF-EFSPGTL 1322 gvrtelsppspFtYv<-* +v+++ s +t af03823 1323 QVYSD----SLLTLP 1333 //