# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oaf05715.fasta.nr -Q af05715.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 af05715, 1309 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6816538 sequences Expectation_n fit: rho(ln(x))= 5.8509+/-0.0002; mu= 12.7077+/- 0.011 mean_var=110.6512+/-21.589, 0's: 40 Z-trim: 79 B-trim: 2737 in 1/63 Lambda= 0.121926 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|119919938|ref|XP_602429.3| PREDICTED: similar t (1396) 8074 1432.2 0 gi|194228094|ref|XP_001914715.1| PREDICTED: protoc (1170) 7496 1330.4 0 gi|168273220|dbj|BAG10449.1| protocadherin-19 prec (1101) 7206 1279.4 0 gi|157426845|ref|NP_065817.2| protocadherin 19 iso (1100) 7189 1276.4 0 gi|57112567|ref|XP_549133.1| PREDICTED: similar to (1098) 7035 1249.3 0 gi|148688470|gb|EDL20417.1| mCG11037, isoform CRA_ (1098) 6979 1239.5 0 gi|149055462|gb|EDM07046.1| protocadherin 19 (pred (1098) 6966 1237.2 0 gi|157426851|ref|NP_001098716.1| protocadherin 19 (1097) 6962 1236.5 0 gi|119623210|gb|EAX02805.1| protocadherin 19, isof ( 996) 6549 1163.8 0 gi|110002501|gb|AAI18530.1| Pcdh19 protein [Mus mu ( 992) 6306 1121.0 0 gi|143330542|gb|ABO93197.1| protocadherin 19 [Gall (1086) 5941 1056.9 0 gi|149640037|ref|XP_001512989.1| PREDICTED: simila (1098) 5677 1010.4 0 gi|120537643|gb|AAI29244.1| Wu:fc83e05 protein [Da (1078) 5062 902.3 0 gi|109131556|ref|XP_001091349.1| PREDICTED: protoc (1683) 4805 857.2 0 gi|194045043|ref|XP_001924405.1| PREDICTED: simila ( 793) 4732 844.1 0 gi|114689419|ref|XP_521169.2| PREDICTED: protocadh ( 716) 4616 823.6 0 gi|73620979|sp|Q8TAB3|PCD19_HUMAN Protocadherin-19 (1148) 4617 824.0 0 gi|123225930|emb|CAM21149.1| protocadherin 19 [Mus (1145) 4557 813.4 0 gi|62667172|ref|XP_228429.3| PREDICTED: similar to (1145) 4543 811.0 0 gi|73621358|sp|Q80TF3|PCD19_MOUSE Protocadherin-19 (1145) 4541 810.6 0 gi|123225931|emb|CAM21150.1| protocadherin 19 [Mus ( 641) 4043 722.8 1.5e-205 gi|47226195|emb|CAG08342.1| unnamed protein produc ( 924) 4040 722.4 2.8e-205 gi|189528164|ref|XP_683370.3| PREDICTED: wu:fc83e0 ( 836) 3985 712.7 2.1e-202 gi|57209120|emb|CAI41393.1| protocadherin 19 [Homo ( 602) 3963 708.7 2.5e-201 gi|51476286|emb|CAH18133.1| hypothetical protein [ ( 601) 3941 704.8 3.6e-200 gi|26338323|dbj|BAC32847.1| unnamed protein produc ( 671) 3885 695.0 3.6e-197 gi|171362750|dbj|BAG15887.1| protocadherin19 isofo ( 800) 3839 687.0 1.1e-194 gi|125829617|ref|XP_689835.2| PREDICTED: protocadh (1137) 3114 559.6 3.5e-156 gi|57209121|emb|CAI41394.1| protocadherin 19 [Homo ( 649) 2597 468.4 5.6e-129 gi|118084809|ref|XP_417021.2| PREDICTED: similar t (1174) 2410 435.8 6.8e-119 gi|47227018|emb|CAG05910.1| unnamed protein produc ( 891) 2400 433.9 1.9e-118 gi|171362748|dbj|BAG15886.1| protocadherin19 isofo ( 729) 2382 430.7 1.5e-117 gi|119623209|gb|EAX02804.1| protocadherin 19, isof ( 350) 2360 426.5 1.3e-116 gi|47230571|emb|CAF99764.1| unnamed protein produc ( 711) 2288 414.1 1.4e-112 gi|42542548|gb|AAH66445.1| Wu:fq40g12 [Danio rerio (1001) 2186 396.3 4.4e-107 gi|115292041|gb|AAI21911.1| Protocadherin 10 [Xeno (1009) 2159 391.6 1.2e-105 gi|114596047|ref|XP_001134819.1| PREDICTED: protoc (1026) 2140 388.2 1.2e-104 gi|114596045|ref|XP_517439.2| PREDICTED: protocadh (1022) 2135 387.4 2.2e-104 gi|47212024|emb|CAF96450.1| unnamed protein produc ( 969) 2118 384.4 1.7e-103 gi|14210853|gb|AAK57196.1|AF334802_1 OL-protocadhe (1030) 2110 383.0 4.8e-103 gi|54311358|gb|AAH84899.1| Protocadherin 18 [Xenop (1145) 2051 372.6 6.8e-100 gi|157649893|gb|ABV59318.1| protocadherin delta1 [ ( 967) 2018 366.8 3.4e-98 gi|28189085|dbj|BAC56231.1| protocadherin 10 [Dani (1026) 2013 365.9 6.5e-98 gi|47682330|gb|AAH70019.1| Protocadherin 10b [Dani (1026) 2013 365.9 6.5e-98 gi|194208449|ref|XP_001915698.1| PREDICTED: protoc (1128) 2003 364.2 2.4e-97 gi|119625546|gb|EAX05141.1| protocadherin 18, isof (1092) 1997 363.1 4.8e-97 gi|158257468|dbj|BAF84707.1| unnamed protein produ (1134) 1997 363.1 4.9e-97 gi|119625545|gb|EAX05140.1| protocadherin 18, isof (1093) 1996 362.9 5.4e-97 gi|41017505|sp|Q9HCL0|PCD18_HUMAN Protocadherin-18 (1128) 1996 363.0 5.5e-97 gi|62739985|gb|AAH93815.1| Protocadherin 18 [Homo (1135) 1996 363.0 5.5e-97 >>gi|119919938|ref|XP_602429.3| PREDICTED: similar to Pr (1396 aa) initn: 8095 init1: 7818 opt: 8074 Z-score: 7673.2 bits: 1432.2 E(): 0 Smith-Waterman score: 8074; 94.185% identity (96.940% similar) in 1307 aa overlap (3-1309:93-1396) 10 20 30 af0571 RTGLEEASVAPPDPGGRIPSGYSLRSELGALG :::.::::: :::::.:.: : .: : :: gi|119 TRPSNLLKPTTVQGSKLSSRQPLSPPPSSAGLEKASVAPQDPGGRVPGGSCLCGEPGELG 70 80 90 100 110 120 40 50 60 70 80 90 af0571 GGLCACQVHRQRVRQPQCRCTAAGRAVPERLRLLRSPYLRLKYCPDSAVRPPGRADAARP :::::::::..::::::.::::.::::: .: :::. ::::.: : .::. : gi|119 VDPCACQVHRQRAHQPQCRCAAAGRVVPERLYPHCTPRLRLQCGPDSAARRSGFSDAVPP 130 140 150 160 170 180 100 110 120 130 140 150 af0571 AALGGCRQSRPANFEGVKLSSRAGGRGLGAARRSLGPSEPPGPPRAPAASAATSALEPPR ::: ::: ::::: ::.::::::::::::::::::::::: :::: ::::::::: : gi|119 AALRRFCQSRRANFEGGKLNSRAGGRGLGAARRSLGPSEPPGPARAPAESAATSALEPVR 190 200 210 220 230 240 160 170 180 190 200 210 af0571 VSPARRRAALGGTSPAASGATGRAQQAARAGGKLERRRRRSRRGVERRGQAEPRAAMESL ::: ::::::::: :::::: ::::::::.:::::::::::::::::::::::::::::: gi|119 VSPPRRRAALGGTPPAASGAPGRAQQAARVGGKLERRRRRSRRGVERRGQAEPRAAMESL 250 260 270 280 290 300 220 230 240 250 260 270 af0571 LLPVLLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVV :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLPVLLLLAVLWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVV 310 320 330 340 350 360 280 290 300 310 320 330 af0571 SNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLND 370 380 390 400 410 420 340 350 360 370 380 390 af0571 NAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDG 430 440 450 460 470 480 400 410 420 430 440 450 af0571 SRFAELVVEKSLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYA :::::::::::::::::::::::::::::::::.::::::::::::::::::::.::::. gi|119 SRFAELVVEKSLDRETQSHYSFRITALDGGDPPHLGTVGLSIKVTDSNDNNPVFGESTYS 490 500 510 520 530 540 460 470 480 490 500 510 af0571 VSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGAL ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|119 VSVPENSPPNTPVIRLNATDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGAL 550 560 570 580 590 600 520 530 540 550 560 570 af0571 DYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPP 610 620 630 640 650 660 580 590 600 610 620 630 af0571 GYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQ 670 680 690 700 710 720 640 650 660 670 680 690 af0571 ARDGGVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGL ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|119 ARDGGVPMLQSAKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGL 730 740 750 760 770 780 700 710 720 730 740 750 af0571 NGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQ 790 800 810 820 830 840 760 770 780 790 800 810 af0571 SNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVT ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|119 SNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVT 850 860 870 880 890 900 820 830 840 850 860 870 af0571 YDMTEGDRGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTSLSASALVLIYLSP :::::::::::::::.::::::::::.::::.:::::::::::::::::::::::::::: gi|119 YDMTEGDRGFFEIDQINGEVRTTRTFSESSKASYELIVVAHDHGKTSLSASALVLIYLSP 910 920 930 940 950 960 880 890 900 910 920 930 af0571 ALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGH 970 980 990 1000 1010 1020 940 950 960 970 980 990 af0571 QKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSEST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSEST 1030 1040 1050 1060 1070 1080 1000 1010 1020 1030 1040 1050 af0571 FLNVENQNTRNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIK ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|119 FLNVENQNTRNTSANHIYHHSFNSQGPQQPDLIINGMPLPETENYSFDSNYVNSRAHLIK 1090 1100 1110 1120 1130 1140 1060 1070 1080 1090 1100 1110 af0571 SSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQ :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|119 SSSTFKDLEGNSLKDSGHEESDQTDSEHDIQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQ 1150 1160 1170 1180 1190 1200 1120 1130 1140 1150 1160 1170 af0571 NEGFHCREECRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPT ::::::::::::::::::::::::::: :::::::::::.::::::::::::::::::: gi|119 NEGFHCREECRILGHSDRCWMPRNPMPTCSKSPEHVRNIITLSIEATAADVEAYDDCGPT 1210 1220 1230 1240 1250 1260 1180 1190 1200 1210 1220 1230 af0571 KRTFATFGKDVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHL ::::::::::::::::::::::::.:::::: :::::::.:::::::::::::::::::: gi|119 KRTFATFGKDVSDHPAEERPTLKGRRTVDVTTCSPKVNSAIREAGNGCEAISPVTSPLHL 1270 1280 1290 1300 1310 1320 1240 1250 1260 1270 1280 1290 af0571 KSSLPTKPSVSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKE :: ::::::::::.::::::::::::: ::::.:::::::::::.:::.:::.::::: gi|119 KSPLPTKPSVSYTVALAPPARDLEQYV---NNGPSRPSEAEPRGADGEKVVHEVNPILKE 1330 1340 1350 1360 1370 1300 af0571 GRNKESPGVKRLKDIVL ::.::::::::::::.: gi|119 GRDKESPGVKRLKDIIL 1380 1390 >>gi|194228094|ref|XP_001914715.1| PREDICTED: protocadhe (1170 aa) initn: 7496 init1: 7496 opt: 7496 Z-score: 7124.7 bits: 1330.4 E(): 0 Smith-Waterman score: 7496; 97.856% identity (99.314% similar) in 1166 aa overlap (144-1309:5-1170) 120 130 140 150 160 170 af0571 RAGGRGLGAARRSLGPSEPPGPPRAPAASAATSALEPPRVSPARRRAALGGTSPAASGAT ::::::: :::: :::.::::: :::::. gi|194 MSPPATSALEPARVSPPRRRSALGGTPPAASGSP 10 20 30 180 190 200 210 220 230 af0571 GRAQQAARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINL :::::::::.::::::::: ::::::::::::::::::::::::::::.::::::::::: gi|194 GRAQQAARASGKLERRRRRPRRGVERRGQAEPRAAMESLLLPVLLLLAVLWTQAAALINL 40 50 60 70 80 90 240 250 260 270 280 290 af0571 KYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQ 100 110 120 130 140 150 300 310 320 330 340 350 af0571 KIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPG 160 170 180 190 200 210 360 370 380 390 400 410 af0571 TRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYS 220 230 240 250 260 270 420 430 440 450 460 470 af0571 FRITALDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDP ::::::::::::.::::::::::::::::::::.:::::::::::::::::::::::::: gi|194 FRITALDGGDPPHLGTVGLSIKVTDSNDNNPVFGESTYAVSVPENSPPNTPVIRLNASDP 280 290 300 310 320 330 480 490 500 510 520 530 af0571 DEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNS ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|194 DEGTNGQVVYSFYGYVNDRTRELFQIDPHSALVTVTGALDYEEGHVYELDVQAKDLGPNS 340 350 360 370 380 390 540 550 560 570 580 590 af0571 IPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQ 400 410 420 430 440 450 600 610 620 630 640 650 af0571 CRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITD :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|194 CRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVRITD 460 470 480 490 500 510 660 670 680 690 700 710 af0571 ENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTY 520 530 540 550 560 570 720 730 740 750 760 770 af0571 VSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITA 580 590 600 610 620 630 780 790 800 810 820 830 af0571 PPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVR :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|194 PPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVR 640 650 660 670 680 690 840 850 860 870 880 890 af0571 TTRTFGESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIAL ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TTRTFGESSKASYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIAL 700 710 720 730 740 750 900 910 920 930 940 950 af0571 GSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRD 760 770 780 790 800 810 960 970 980 990 1000 1010 af0571 VEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHS 820 830 840 850 860 870 1020 1030 1040 1050 1060 1070 af0571 FNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 FNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEES 880 890 900 910 920 930 1080 1090 1100 1110 1120 1130 af0571 DQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWM 940 950 960 970 980 990 1140 1150 1160 1170 1180 1190 af0571 PRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPT :::::: ::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|194 PRNPMPTRSKSPEHVRNVIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPT 1000 1010 1020 1030 1040 1050 1200 1210 1220 1230 1240 1250 af0571 LKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPAR :::.:::::::::::::..:::::::::::::::::::::: ::::::::::.::::::: gi|194 LKGRRTVDVTICSPKVNGAIREAGNGCEAISPVTSPLHLKSPLPTKPSVSYTVALAPPAR 1060 1070 1080 1090 1100 1110 1260 1270 1280 1290 1300 af0571 DLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL :::::::::::::.:::::::::::::::::::.:::::::.:::::::::::::: gi|194 DLEQYVNNVNNGPSRPSEAEPRGADSEKVMHEVNPILKEGRDKESPGVKRLKDIVL 1120 1130 1140 1150 1160 1170 >>gi|168273220|dbj|BAG10449.1| protocadherin-19 precurso (1101 aa) initn: 7206 init1: 7206 opt: 7206 Z-score: 6849.4 bits: 1279.4 E(): 0 Smith-Waterman score: 7206; 100.000% identity (100.000% similar) in 1101 aa overlap (209-1309:1-1101) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::::::::::::::::::: gi|168 MESLLLPVLLLLAILWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 870 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM 880 890 900 910 920 930 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR 940 950 960 970 980 990 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY 1000 1010 1020 1030 1040 1050 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL 1060 1070 1080 1090 1100 >>gi|157426845|ref|NP_065817.2| protocadherin 19 isoform (1100 aa) initn: 5937 init1: 5485 opt: 7189 Z-score: 6833.2 bits: 1276.4 E(): 0 Smith-Waterman score: 7189; 99.909% identity (99.909% similar) in 1101 aa overlap (209-1309:1-1100) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::::::::::::::::::: gi|157 MESLLLPVLLLLAILWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|157 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSS-TFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM 870 880 890 900 910 920 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR 930 940 950 960 970 980 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY 990 1000 1010 1020 1030 1040 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL 1050 1060 1070 1080 1090 1100 >>gi|57112567|ref|XP_549133.1| PREDICTED: similar to Pro (1098 aa) initn: 7051 init1: 6774 opt: 7035 Z-score: 6686.8 bits: 1249.3 E(): 0 Smith-Waterman score: 7035; 97.366% identity (99.092% similar) in 1101 aa overlap (209-1309:1-1098) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::.:::::::::::::::: gi|571 MESLLLPVLLLLAVLWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFHITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::.::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|571 LDGGDPPHLGTVGLSIKVTDSNDNNPVFGESTYAVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG ::::::::::::::::::::::::.::::::::::::::::::::::::::.:::::::: gi|571 KVTVSVLDTNDNPPVINLLSVNSEMVEVSESAPPGYVIALVRVSDRDSGLNARVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVRITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF ::::::::::::::::::::::.::::::::::::::::::::::::: ::::::::::: gi|571 GTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDPVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 DESSKASYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 870 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM 880 890 900 910 920 930 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR : ::::::::::.:::::::::::::::::::::::::::::::::.: :::::::::.: gi|571 PTRSKSPEHVRNVIALSIEATAADVEAYDDCGPTKRTFATFGKDVSEHLAEERPTLKGRR 940 950 960 970 980 990 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY ::::::::::::..:::::::::::::::::::::: :::::::::::::::::.::::: gi|571 TVDVTICSPKVNGAIREAGNGCEAISPVTSPLHLKSPLPTKPSVSYTIALAPPAHDLEQY 1000 1010 1020 1030 1040 1050 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL .:: ::.:::::::::::::::::::.: :::::.::::::::::::.: gi|571 INN---GPSRPSEAEPRGADSEKVMHEVNPTLKEGRDKESPGVKRLKDIIL 1060 1070 1080 1090 >>gi|148688470|gb|EDL20417.1| mCG11037, isoform CRA_a [M (1098 aa) initn: 7197 init1: 6746 opt: 6979 Z-score: 6633.6 bits: 1239.5 E(): 0 Smith-Waterman score: 6979; 96.458% identity (99.001% similar) in 1101 aa overlap (209-1309:1-1098) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::.:::::::::::::::: gi|148 MESLLLPVLLLLAVLWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::..:::::::::::::::::::.::::.:::::::::::::::::::::::::: gi|148 LDGGDPPHMGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|148 KVTVSVLDTNDNPPIINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH :::::::::::::::::::::::::::::::::::::.::::::::::::: :::::::: gi|148 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQSAKSFTVRITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|148 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDMGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|148 GTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG .:.:: :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NENSKPSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG ::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::::: gi|148 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTTASHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 870 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM 880 890 900 910 920 930 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR : ::::::::::::::::::::::::::::::::::::::::::::.: ::::: ::::: gi|148 PTRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSSHRAEERPILKGKR 940 950 960 970 980 990 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY :::::::::::::.:::::::::::::::::::::: ::::::.:::.::::::.:::.. gi|148 TVDVTICSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPSISYTVALAPPAHDLEHH 1000 1010 1020 1030 1040 1050 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL .:. : .:::::::::::.:::::::.:: :.::.::::.::::::::: gi|148 ANS---GASRPSEAEPRGADNEKVMHEVNPIRKDGRDKESPSVKRLKDIVL 1060 1070 1080 1090 >>gi|149055462|gb|EDM07046.1| protocadherin 19 (predicte (1098 aa) initn: 7410 init1: 6718 opt: 6966 Z-score: 6621.2 bits: 1237.2 E(): 0 Smith-Waterman score: 6966; 96.094% identity (99.092% similar) in 1101 aa overlap (209-1309:1-1098) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::.:::::::::::::::: gi|149 MESLLLPVLLLLAVLWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD ::::::::::::::::::::::.: ::::::::::::::::::::::::::::::::::: gi|149 EEQRAGTVIANVAKDAREAGFAMDTRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::..:::::.:::::::::::::.::::.:::::::::::::::::::::::::: gi|149 LDGGDPPHMGTVGLTIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVTVSVLDTNDNPPIINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH :::::::::::::::::::::::::::::::::::::.::::::::::::: :::::::: gi|149 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQSAKSFTVRITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|149 NSGDIYALRSFNHEQTKAFEFKVLAKDGGMPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|149 GTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG .:.::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NENSKASYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|149 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTTANHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 870 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::.:::::::.:::::::::::::::::::::::: gi|149 EHDVQRSLYCDTAVNDVLNTSVTSMGSHMPDHDQNDGFHCREECRILGHSDRCWMPRNPM 880 890 900 910 920 930 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR : :::::::.::::::::::::::::::::::::::::::::::::.:::::: ::::: gi|149 PTRSKSPEHMRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSSHPAEERSILKGKR 940 950 960 970 980 990 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY :::::::::::::.:::::::::::::::::::::: ::::::.:::.::::::.::... gi|149 TVDVTICSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPSMSYTVALAPPAHDLDHH 1000 1010 1020 1030 1040 1050 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL .:. : .:::::::::::::::::::.:::::::.::::.:::::::.: gi|149 ANT---GASRPSEAEPRGADSEKVMHEVNPILKEGRDKESPAVKRLKDIIL 1060 1070 1080 1090 >>gi|157426851|ref|NP_001098716.1| protocadherin 19 isof (1097 aa) initn: 7190 init1: 5416 opt: 6962 Z-score: 6617.4 bits: 1236.5 E(): 0 Smith-Waterman score: 6962; 96.367% identity (98.910% similar) in 1101 aa overlap (209-1309:1-1097) 180 190 200 210 220 230 af0571 AARAGGKLERRRRRSRRGVERRGQAEPRAAMESLLLPVLLLLAILWTQAAALINLKYSVE :::::::::::::.:::::::::::::::: gi|157 MESLLLPVLLLLAVLWTQAAALINLKYSVE 10 20 30 240 250 260 270 280 290 af0571 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRD 40 50 60 70 80 90 300 310 320 330 340 350 af0571 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 LLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 100 110 120 130 140 150 360 370 380 390 400 410 af0571 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 DSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA 160 170 180 190 200 210 420 430 440 450 460 470 af0571 LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTN :::::::..:::::::::::::::::::.::::.:::::::::::::::::::::::::: gi|157 LDGGDPPHMGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTN 220 230 240 250 260 270 480 490 500 510 520 530 af0571 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHC 280 290 300 310 320 330 540 550 560 570 580 590 af0571 KVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|157 KVTVSVLDTNDNPPIINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLG 340 350 360 370 380 390 600 610 620 630 640 650 af0571 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNH :::::::::::::::::::::::::::::::::::::.::::::::::::: :::::::: gi|157 NVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQSAKSFTVRITDENDNH 400 410 420 430 440 450 660 670 680 690 700 710 af0571 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINP :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|157 PHFSKPYYQVIVQENNTPGAYLLSVSARDPDMGLNGSVSYQIVPSQVRDMPVFTYVSINP 460 470 480 490 500 510 720 730 740 750 760 770 af0571 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 NSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLIN 520 530 540 550 560 570 780 790 800 810 820 830 af0571 GTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|157 GTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF 580 590 600 610 620 630 840 850 860 870 880 890 af0571 GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG .:.:: :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 NENSKPSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAG 640 650 660 670 680 690 900 910 920 930 940 950 af0571 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 ILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETD 700 710 720 730 740 750 960 970 980 990 1000 1010 af0571 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQG ::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::::: gi|157 KMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTTASHIYHHSFNSQG 760 770 780 790 800 810 1020 1030 1040 1050 1060 1070 af0571 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDS :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|157 PQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSS-TFKDLEGNSLKDSGHEESDQTDS 820 830 840 850 860 1080 1090 1100 1110 1120 1130 af0571 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPM 870 880 890 900 910 920 1140 1150 1160 1170 1180 1190 af0571 PIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAEERPTLKGKR : ::::::::::::::::::::::::::::::::::::::::::::.: ::::: ::::: gi|157 PTRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSSHRAEERPILKGKR 930 940 950 960 970 980 1200 1210 1220 1230 1240 1250 af0571 TVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY :::::::::::::.:::::::::::::::::::::: ::::::.:::.::::::.:::.. gi|157 TVDVTICSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPSISYTVALAPPAHDLEHH 990 1000 1010 1020 1030 1040 1260 1270 1280 1290 1300 af0571 VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL .:. : .:::::::::::.:::::::.:: :.::.::::.::::::::: gi|157 ANS---GASRPSEAEPRGADNEKVMHEVNPIRKDGRDKESPSVKRLKDIVL 1050 1060 1070 1080 1090 >>gi|119623210|gb|EAX02805.1| protocadherin 19, isoform (996 aa) initn: 6549 init1: 6549 opt: 6549 Z-score: 6225.3 bits: 1163.8 E(): 0 Smith-Waterman score: 6549; 100.000% identity (100.000% similar) in 996 aa overlap (314-1309:1-996) 290 300 310 320 330 340 af0571 PSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIE :::::::::::::::::::::::::::::: gi|119 MSSSMEICVIKVEIKDLNDNAPSFPAAQIE 10 20 30 350 360 370 380 390 400 af0571 LEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKS 40 50 60 70 80 90 410 420 430 440 450 460 af0571 LDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNT 100 110 120 130 140 150 470 480 490 500 510 520 af0571 PVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELD 160 170 180 190 200 210 530 540 550 560 570 580 af0571 VQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSD 220 230 240 250 260 270 590 600 610 620 630 640 af0571 RDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQS 280 290 300 310 320 330 650 660 670 680 690 700 af0571 AKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPS 340 350 360 370 380 390 710 720 730 740 750 760 af0571 QVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILD 400 410 420 430 440 450 770 780 790 800 810 820 af0571 VNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFF 460 470 480 490 500 510 830 840 850 860 870 880 af0571 EIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSV 520 530 540 550 560 570 890 900 910 920 930 940 af0571 NLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKIS 580 590 600 610 620 630 950 960 970 980 990 1000 af0571 KNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRN 640 650 660 670 680 690 1010 1020 1030 1040 1050 1060 af0571 TSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGN 700 710 720 730 740 750 1070 1080 1090 1100 1110 1120 af0571 SLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECR 760 770 780 790 800 810 1130 1140 1150 1160 1170 1180 af0571 ILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDV 820 830 840 850 860 870 1190 1200 1210 1220 1230 1240 af0571 SDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVS 880 890 900 910 920 930 1250 1260 1270 1280 1290 1300 af0571 YTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKR 940 950 960 970 980 990 af0571 LKDIVL :::::: gi|119 LKDIVL >>gi|110002501|gb|AAI18530.1| Pcdh19 protein [Mus muscul (992 aa) initn: 6534 init1: 4760 opt: 6306 Z-score: 5994.4 bits: 1121.0 E(): 0 Smith-Waterman score: 6306; 96.084% identity (98.795% similar) in 996 aa overlap (314-1309:1-992) 290 300 310 320 330 340 af0571 PSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIE :::::::::::::::::::::::::::::: gi|110 MSSSMEICVIKVEIKDLNDNAPSFPAAQIE 10 20 30 350 360 370 380 390 400 af0571 LEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 LEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKS 40 50 60 70 80 90 410 420 430 440 450 460 af0571 LDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNT ::::::::::::::::::::::..:::::::::::::::::::.::::.::::::::::: gi|110 LDRETQSHYSFRITALDGGDPPHMGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNT 100 110 120 130 140 150 470 480 490 500 510 520 af0571 PVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 PVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELD 160 170 180 190 200 210 530 540 550 560 570 580 af0571 VQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSD :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|110 VQAKDLGPNSIPAHCKVTVSVLDTNDNPPIINLLSVNSELVEVSESAPPGYVIALVRVSD 220 230 240 250 260 270 590 600 610 620 630 640 af0571 RDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDGGVPMLQS ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|110 RDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQS 280 290 300 310 320 330 650 660 670 680 690 700 af0571 AKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPS :::::: :::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|110 AKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDMGLNGSVSYQIVPS 340 350 360 370 380 390 710 720 730 740 750 760 af0571 QVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 QVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILD 400 410 420 430 440 450 770 780 790 800 810 820 af0571 VNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFF :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|110 VNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFF 460 470 480 490 500 510 830 840 850 860 870 880 af0571 EIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSV :::::::::::::::.:.:: ::::::::::::::::::::::::::::::::::::::: gi|110 EIDQVNGEVRTTRTFNENSKPSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSV 520 530 540 550 560 570 890 900 910 920 930 940 af0571 NLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 NLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKIS 580 590 600 610 620 630 950 960 970 980 990 1000 af0571 KNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 KNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRN 640 650 660 670 680 690 1010 1020 1030 1040 1050 1060 af0571 TSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGN :.:.::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|110 TTASHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSS-TFKDLEGN 700 710 720 730 740 1070 1080 1090 1100 1110 1120 af0571 SLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 SLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECR 750 760 770 780 790 800 1130 1140 1150 1160 1170 1180 af0571 ILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDV :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|110 ILGHSDRCWMPRNPMPTRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDV 810 820 830 840 850 860 1190 1200 1210 1220 1230 1240 af0571 SDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVS :.: ::::: ::::::::::::::::::.:::::::::::::::::::::: ::::::.: gi|110 SSHRAEERPILKGKRTVDVTICSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPSIS 870 880 890 900 910 920 1250 1260 1270 1280 1290 1300 af0571 YTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKR ::.::::::.:::...:. : .:::::::::::.:::::::.:: :.::.::::.::: gi|110 YTVALAPPAHDLEHHANS---GASRPSEAEPRGADNEKVMHEVNPIRKDGRDKESPSVKR 930 940 950 960 970 980 af0571 LKDIVL :::::: gi|110 LKDIVL 990 1309 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 6 17:16:14 2008 done: Wed Aug 6 17:18:33 2008 Total Scan time: 1182.790 Total Display time: 0.870 Function used was FASTA [version 34.26.5 April 26, 2007]