hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-17183427/chunk_1/iprscan-20080806-17183427.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af05715 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 319.2 7e-93 6 PF00028.8.fs Cadherin domain 312.5 7e-91 6 PF08266.2.fs Cadherin-like 69.4 8.6e-20 1 PF08266.2.ls Cadherin-like 71.4 2.8e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/1 231 317 .. 1 84 [] 69.4 8.6e-20 PF08266.2.ls 1/1 231 317 .. 1 84 [] 71.4 2.8e-18 PF00028.8.ls 1/6 233 328 .. 1 107 [] 0.1 0.13 PF00028.8.fs 2/6 342 437 .. 1 107 [] 40.2 6.4e-11 PF00028.8.ls 2/6 342 437 .. 1 107 [] 42.1 1.8e-09 PF00028.8.ls 3/6 451 545 .. 1 107 [] 95.6 1.4e-25 PF00028.8.fs 3/6 451 545 .. 1 107 [] 93.8 2.8e-26 PF00028.8.ls 4/6 562 652 .. 1 107 [] 51.7 2.3e-12 PF00028.8.fs 4/6 562 652 .. 1 107 [] 49.9 1.1e-13 PF00028.8.fs 5/6 666 762 .. 1 107 [] 66.2 2.3e-18 PF00028.8.ls 5/6 666 762 .. 1 107 [] 68.0 2.7e-17 PF00028.8.ls 6/6 781 871 .. 1 107 [] 61.6 2.4e-15 PF00028.8.fs 6/6 781 871 .. 1 107 [] 59.8 1.6e-16 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 1, from 231 to 317: score 69.4, E = 8.6e-20 *->gqirYSVpEEterGsfVGNlAKD.....LGLdvqeLaaRgaRivSgg + YSV EE G++++N+AKD ++ ++ Ld++ +a +R+vS++ af05715 231 INLKYSVEEEQRAGTVIANVAKDareagFALDPRQASA--FRVVSNS 275 nkqyFqlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* + + n+ +G L+++ +iDR LC qs++C+++lev+ + af05715 276 APHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSS 317 PF08266.2.ls: domain 1 of 1, from 231 to 317: score 71.4, E = 2.8e-18 *->gqirYSVpEEterGsfVGNlAKD.....LGLdvqeLaaRgaRivSgg + YSV EE G++++N+AKD ++ ++ Ld++ +a +R+vS++ af05715 231 INLKYSVEEEQRAGTVIANVAKDareagFALDPRQASA--FRVVSNS 275 nkqyFqlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* + + n+ +G L+++ +iDR LC qs++C+++lev+ + af05715 276 APHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSS 317 PF00028.8.ls: domain 1 of 6, from 233 to 328: score 0.1, E = 0.13 *->ysasvpEnapvGtevltvtAtDaDd..PlgpNgrirYsilggnpggw sv+E ++ Gt +++v+ + + l p + ++ ++++ ++ af05715 233 LKYSVEEEQRAGTVIANVAKDAREAgfALDPRQASAFRVVSNSAPHL 279 FrIdpdtGdnegiisttkpLDREeif..ngeYeLtveAtDadpllasggg I+p +G + t++ +DR ++ +++ +++e++ + af05715 280 VDINPSSGL----LVTKQKIDRDLLCrqSPKCIISLEVMSS--------- 316 pplsstatvtitVl<-* +++ +++ af05715 317 --SMEICVIKVEIK 328 PF00028.8.fs: domain 2 of 6, from 342 to 437: score 40.2, E = 6.4e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +++E a++Gt++ A+D+D +g g +Y +++++ F af05715 342 IELEISEAASPGTRIPLDSAYDPD--SGSFGVQTYELTPNE---LFG 383 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp ++ +t + + ++ + k+LDRE++ + Y++ + A D+ g p af05715 384 LEIKTRGDGSRfaeLVVEKSLDRETQ--SHYSFRITALDG-------GDP 424 plsstatvtitVl<-* p+ +t+ + i+V+ af05715 425 PRLGTVGLSIKVT 437 PF00028.8.ls: domain 2 of 6, from 342 to 437: score 42.1, E = 1.8e-09 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +++E a++Gt++ A+D+D +g g +Y +++++ F af05715 342 IELEISEAASPGTRIPLDSAYDPD--SGSFGVQTYELTPNE---LFG 383 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp ++ +t + + ++ + k+LDRE++ + Y++ + A D+ g p af05715 384 LEIKTRGDGSRfaeLVVEKSLDRETQ--SHYSFRITALDG-------GDP 424 plsstatvtitVl<-* p+ +t+ + i+V+ af05715 425 PRLGTVGLSIKVT 437 PF00028.8.ls: domain 3 of 6, from 451 to 545: score 95.6, E = 1.4e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +svpEn+p++t+v++++A+D+D +g+Ng+++Ys+ g ++++ af05715 451 YAVSVPENSPPNTPVIRLNASDPD--EGTNGQVVYSFYGYVNdrtRE 495 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F Idp++G +++t LD+Ee YeL v A+D g+ af05715 496 LFQIDPHSGL----VTVTGALDYEEG--HVYELDVQAKDL-------GPN 532 plsstatvtitVl<-* + + + vt++Vl af05715 533 SIPAHCKVTVSVL 545 PF00028.8.fs: domain 3 of 6, from 451 to 545: score 93.8, E = 2.8e-26 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +svpEn+p++t+v++++A+D+D +g+Ng+++Ys+ g ++++ af05715 451 YAVSVPENSPPNTPVIRLNASDPD--EGTNGQVVYSFYGYVNdrtRE 495 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F Idp++G +++t LD+Ee YeL v A+D g+ af05715 496 LFQIDPHSGL----VTVTGALDYEEG--HVYELDVQAKDL-------GPN 532 plsstatvtitVl<-* + + + vt++Vl af05715 533 SIPAHCKVTVSVL 545 PF00028.8.ls: domain 4 of 6, from 562 to 652: score 51.7, E = 2.3e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++v+E ap+G ++ v+++D+D +g+Ngr+ ++lg+ p Fr af05715 562 ELVEVSESAPPGYVIALVRVSDRD--SGLNGRVQCRLLGNVP---FR 603 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++++ + i + +LDRE+ ++Y+Lt+ A+D+ g p l af05715 604 LQEYESFST--ILVDGRLDREQH--DQYNLTIQARDG-------GVPMLQ 642 statvtitVl<-* s + t+ ++ af05715 643 SAKSFTVLIT 652 PF00028.8.fs: domain 4 of 6, from 562 to 652: score 49.9, E = 1.1e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++v+E ap+G ++ v+++D+D +g+Ngr+ ++lg+ p Fr af05715 562 ELVEVSESAPPGYVIALVRVSDRD--SGLNGRVQCRLLGNVP---FR 603 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++++ + i + +LDRE+ ++Y+Lt+ A+D+ g p l af05715 604 LQEYESFST--ILVDGRLDREQH--DQYNLTIQARDG-------GVPMLQ 642 statvtitVl<-* s + t+ ++ af05715 643 SAKSFTVLIT 652 PF00028.8.fs: domain 5 of 6, from 666 to 762: score 66.2, E = 2.3e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v En +G +l+v A+D+D lg+Ng+++Y i++ +++ + af05715 666 YQVIVQENNTPGAYLLSVSARDPD--LGLNGSVSYQIVPSQVrdmpv 710 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +I+p++Gd i+ ++ + E++ +e+ v+A+D+ g af05715 711 FTYVSINPNSGD----IYALRSFNHEQT--KAFEFKVLAKDG-------G 747 gpplsstatvtitVl<-* p+l s atv++ +l af05715 748 LPSLQSNATVRVIIL 762 PF00028.8.ls: domain 5 of 6, from 666 to 762: score 68.0, E = 2.7e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v En +G +l+v A+D+D lg+Ng+++Y i++ +++ + af05715 666 YQVIVQENNTPGAYLLSVSARDPD--LGLNGSVSYQIVPSQVrdmpv 710 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +I+p++Gd i+ ++ + E++ +e+ v+A+D+ g af05715 711 FTYVSINPNSGD----IYALRSFNHEQT--KAFEFKVLAKDG-------G 747 gpplsstatvtitVl<-* p+l s atv++ +l af05715 748 LPSLQSNATVRVIIL 762 PF00028.8.ls: domain 6 of 6, from 781 to 871: score 61.6, E = 2.4e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +p n+ +G v++v+A D D +g Ngr++Y +++g+ +g F+ af05715 781 AEVYIPRNSGIGYLVTVVKAEDYD--EGENGRVTYDMTEGD-RGFFE 824 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id+ +G+ ++tt+ + + YeL+v+A D+ g ++ls af05715 825 IDQVNGE----VRTTRTFGESSK--SSYELIVVAHDH-------GKTSLS 861 statvtitVl<-* + a v i + af05715 862 ASALVLIYLS 871 PF00028.8.fs: domain 6 of 6, from 781 to 871: score 59.8, E = 1.6e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +p n+ +G v++v+A D D +g Ngr++Y +++g+ +g F+ af05715 781 AEVYIPRNSGIGYLVTVVKAEDYD--EGENGRVTYDMTEGD-RGFFE 824 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id+ +G+ ++tt+ + + YeL+v+A D+ g ++ls af05715 825 IDQVNGE----VRTTRTFGESSK--SSYELIVVAHDH-------GKTSLS 861 statvtitVl<-* + a v i + af05715 862 ASALVLIYLS 871 //