hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17183427/chunk_1/iprscan-20080806-17183427.nocrc
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Query sequence: af05715
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 447.4   7.3e-130   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6     258   335 ..     1   121 []    19.1    0.032
SM00112    2/6     359   444 ..     1   121 []    70.9  1.6e-16
SM00112    3/6     468   552 ..     1   121 []   105.8  5.1e-27
SM00112    4/6     579   659 ..     1   121 []    89.1  5.1e-22
SM00112    5/6     683   769 ..     1   121 []   105.3  7.2e-27
SM00112    6/6     798   878 ..     1   121 []    57.3    2e-12

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 258 to 335: score 19.1, E = 0.032
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                        A D+ +      +         ++++s++ ++l +I+p++G    
     af05715   258    GFALDPRQ------AS-------AFRVVSnsaphLVDINPSSG---- 287  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                           ++t++ +DR+  +++      ++  +  e++ +         
     af05715   288 -------LLVTKQKIDRDLLCRQS-----PKCIISLEVMSSS-------- 317  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             ++  + + v+++D NDNaP   
     af05715   318 ----------ME-ICVIKVEIKDLNDNAP    335  

SM00112: domain 2 of 6, from 359 to 444: score 70.9, E = 1.6e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                       sA D+Dsg   + g        tY++++++lF ++ +t   g+   
     af05715   359    DSAYDPDSG---SFGV------QTYELTPneLFGLEIKTRGDGSR-- 394  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     + ++++ k+LDRE+q         s+Y+++++A DgG pp        
     af05715   395 --FAELVVEKSLDRETQ---------SHYSFRITALDGGDPP-------- 425  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          + +t+ + ++V+D NDN P   
     af05715   426 -------RLGTVGLSIKVTDSNDNNP    444  

SM00112: domain 3 of 6, from 468 to 552: score 105.8, E = 5.1e-27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++A+D+D+g   +Ng+      v+Ys+ +  ++++++lF+Idp++G 
     af05715   468    LNASDPDEG---TNGQ------VVYSFYGyvndrtreLFQIDPHSG- 504  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              +t+t++LD+Ee+          +Y+L v+A+D G+++  
     af05715   505 ----------LVTVTGALDYEEG---------HVYELDVQAKDLGPNS-- 533  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +++ vtv VlD NDN+P   
     af05715   534 -------------IPAHCKVTVSVLDTNDNPP    552  

SM00112: domain 4 of 6, from 579 to 659: score 89.1, E = 5.1e-22
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      v+++D+Dsg    Ng+      v +++l++ +F++ +          
     af05715   579    VRVSDRDSG---LNGR------VQCRLLGnvPFRLQEYES------- 609  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     + +i + ++LDRE++         ++Y+Lt++A+DgG p         
     af05715   610 --FSTILVDGRLDREQH---------DQYNLTIQARDGGVPM-------- 640  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l+s  ++tv ++D+NDN P   
     af05715   641 -------LQSAKSFTVLITDENDNHP    659  

SM00112: domain 5 of 6, from 683 to 769: score 105.3, E = 7.2e-27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsA+D+D g    Ng       v+Y+i++++ ++ +  ++ sI+p++
     af05715   683    VSARDPDLG---LNGS------VSYQIVPsqvrdmpvftYVSINPNS 720  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           +i++++++++E++         + ++++v A+DgG p+
     af05715   721 G-----------DIYALRSFNHEQT---------KAFEFKVLAKDGGLPS 750  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  l+s+atv+v++lDvNDN P   
     af05715   751 ---------------LQSNATVRVIILDVNDNTP    769  

SM00112: domain 6 of 6, from 798 to 878: score 57.3, E = 2e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A D D+g   eNg+      vtY ++++++++F+Id+ +G     
     af05715   798    VKAEDYDEG---ENGR------VTYDMTEgdrgFFEIDQVNG----- 830  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                         +++tt+++   ++         s+Y+L+v+A D+G  +      
     af05715   831 ------EVRTTRTFGESSK---------SSYELIVVAHDHGKTS------ 859  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                            ls++a v + +    D      
     af05715   860 ---------LSASALVLIYLSPALDAQE    878  

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