hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-17320124/chunk_1/iprscan-20080806-17320124.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af06491 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.ls ABC transporter 373.5 3e-109 2 PF00005.17.fs ABC transporter 369.9 3.6e-108 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/2 1037 1217 .. 1 224 [] 215.0 1.6e-61 PF00005.17.ls 1/2 1037 1217 .. 1 224 [] 216.8 4.7e-62 PF00005.17.fs 2/2 2100 2281 .. 1 224 [] 155.0 1.9e-43 PF00005.17.ls 2/2 2100 2281 .. 1 224 [] 156.8 5.4e-44 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 2, from 1037 to 1217: score 215.0, E = 1.6e-61 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++v+ ++G+NGaGK+T + +l+Gl + Pt +G+ ++ g+d af06491 1037 NQVVSFLGHNGAGKTTTMSILTGLFP-PT--SGSATIY------GHD 1074 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke ++ + r++ +g+++Q++ lf rlTv+e l af06491 1075 IRTEMDEIRKN----LGMCPQHNVLF--DRLTVEEHL------------- 1105 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg +++ rl+++ +ee + ++++++e++ l +++++ + af06491 1106 -WFYSRLKSMaQEEIRREMDKMIEDLELSNKRHS-------------LVQ 1141 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge tLSGG+k++++ A a++ ++ ++LDEPTag Dp +r+++++l+ +++ af06491 1142 TLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKP- 1190 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+t+ll tH++d++d l dri+++++G af06491 1191 -GRTILLSTHHMDEADLLGDRIAIISHG 1217 PF00005.17.ls: domain 1 of 2, from 1037 to 1217: score 216.8, E = 4.7e-62 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++v+ ++G+NGaGK+T + +l+Gl + Pt +G+ ++ g+d af06491 1037 NQVVSFLGHNGAGKTTTMSILTGLFP-PT--SGSATIY------GHD 1074 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke ++ + r++ +g+++Q++ lf rlTv+e l af06491 1075 IRTEMDEIRKN----LGMCPQHNVLF--DRLTVEEHL------------- 1105 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg +++ rl+++ +ee + ++++++e++ l +++++ + af06491 1106 -WFYSRLKSMaQEEIRREMDKMIEDLELSNKRHS-------------LVQ 1141 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge tLSGG+k++++ A a++ ++ ++LDEPTag Dp +r+++++l+ +++ af06491 1142 TLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKP- 1190 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+t+ll tH++d++d l dri+++++G af06491 1191 -GRTILLSTHHMDEADLLGDRIAIISHG 1217 PF00005.17.fs: domain 2 of 2, from 2100 to 2281: score 155.0, E = 1.9e-43 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK++ +k+l+G +s t Ge ++ g++ af06491 2100 GECFGLLGVNGAGKTSTFKMLTGDES-TT--GGEAFVN------GHS 2137 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +e+ + +++gy++Q lf +lT+re l af06491 2138 VL----KELLQVQQSLGYCPQCDALF--DELTAREHL------------- 2168 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++ rl+g + ++ + +aLe++ l++ ad+ ++g af06491 2169 -QLYTRLRGIsWKDEARVVKWALEKLELTKYADK-------------PAG 2204 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ A al+ p +++LDEPT+g Dp++r+ l++l+ +l + af06491 2205 TYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLI-K 2253 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +g++v+l++H++++ + l++r++++ nG af06491 2254 TGRSVVLTSHSMEECEALCTRLAIMVNG 2281 PF00005.17.ls: domain 2 of 2, from 2100 to 2281: score 156.8, E = 5.4e-44 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK++ +k+l+G +s t Ge ++ g++ af06491 2100 GECFGLLGVNGAGKTSTFKMLTGDES-TT--GGEAFVN------GHS 2137 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +e+ + +++gy++Q lf +lT+re l af06491 2138 VL----KELLQVQQSLGYCPQCDALF--DELTAREHL------------- 2168 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++ rl+g + ++ + +aLe++ l++ ad+ ++g af06491 2169 -QLYTRLRGIsWKDEARVVKWALEKLELTKYADK-------------PAG 2204 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ A al+ p +++LDEPT+g Dp++r+ l++l+ +l + af06491 2205 TYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLI-K 2253 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +g++v+l++H++++ + l++r++++ nG af06491 2254 TGRSVVLTSHSMEECEALCTRLAIMVNG 2281 //