hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17320124/chunk_1/iprscan-20080806-17320124.nocrc
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Query sequence: af06491
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  68.4      9e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2    1036  1218 ..     1    92 []    36.3  4.1e-06
SM00382    2/2    2099  2284 ..     1    92 []    32.1  7.7e-05

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 1036 to 1218: score 36.3, E = 4.1e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge......
                       ++vv + G +G+GKTT++  l +l++p++++  ++  d   + ++ 
     af06491  1036    ENQVVSFLGHNGAGKTTTMSILTGLFPPtsgsaTIYGHDIRtemdei 1082 

                   ..................................................
                   +++ +   +++   ++   +++    ++ ++  +++ +++ ++  ++ + 
     af06491  1083 rknlgmcpqhnvlfdrltveehlwfysrlksmaqeeirremdkmiedlel 1132 

                   ............ggqrirlalalark...dvlllDEitslld........
                   ++++++  +  +gg++ +l +a+a  ++++ ++lDE+t+  d   ++   
     af06491  1133 snkrhslvqtlsGGMKRKLSVAIAFVggsRAIILDEPTAGVDpyarraiw 1182 

                   .........vtviattn.dldpallrrrfdrrivllril<-*
                   ++ ++ + ++t+++ t++    +ll    dr+ ++  +    
     af06491  1183 dlilkykpgRTILLSTHhMDEADLLG---DRIAIISHGK    1218 

SM00382: domain 2 of 2, from 2099 to 2284: score 32.1, E = 7.7e-05
                   *->pgevvllvGppGsGKTTlaralarllgp..gviyidge.........
                      pge+ +l G +G+GKT + ++l +    ++g  +++g +  ++  + 
     af06491  2099    PGECFGLLGVNGAGKTSTFKMLTGDESTtgGEAFVNGHsvlkellqv 2145 

                   ..................................................
                   +++ +   + +   ++   +++ +   + ++ + +++ +  +   ++ + 
     af06491  2146 qqslgycpqcdalfdeltarehlqlytrlrgiswkdearvvkwaleklel 2195 

                   ............ggqrirlalalark...dvlllDEitslld........
                    +  ++  +  +gg + +l  a+a  + +  ++lDE+t+  d + ++ + 
     af06491  2196 tkyadkpagtysGGNKRKLSTAIALIgypAFIFLDEPTTGMDpkarrflw 2245 

                   ..........vtviattndldpallrrrfdrrivl.lril<-*
                   ++ +++ + +++v++t++ +++   +++ +  i++++r +   
     af06491  2246 nlildliktgRSVVLTSH-SMEECEALCTRLAIMVnGRLR    2284 

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