hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-11090781/chunk_1/iprscan-20090525-11090781.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af07308 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08074.2.ls CHDCT2 (NUC038) domain 441.4 1.1e-129 1 PF08074.2.fs CHDCT2 (NUC038) domain 439.5 4.2e-129 1 PF00176.13.ls SNF2 family N-terminal domain 366.6 3.7e-107 1 PF00176.13.fs SNF2 family N-terminal domain 364.8 1.3e-106 1 PF06461.2.ls Domain of Unknown Function (DUF1086) 320.1 3.6e-93 1 PF06461.2.fs Domain of Unknown Function (DUF1086) 318.2 1.3e-92 1 PF00628.19.fs PHD-finger 125.8 6.1e-40 2 PF08073.2.fs CHDNT (NUC034) domain 133.2 6.6e-38 1 PF08073.2.ls CHDNT (NUC034) domain 135.1 1.7e-37 1 PF00628.19.ls PHD-finger 129.5 8.7e-36 2 PF00271.21.fs Helicase conserved C-terminal domain 99.1 2.6e-28 1 PF00271.21.ls Helicase conserved C-terminal domain 101.1 3.1e-27 1 PF06465.4.fs Domain of Unknown Function (DUF1087) 94.3 7.5e-27 1 PF06465.4.ls Domain of Unknown Function (DUF1087) 96.3 8.5e-26 1 PF00385.14.fs 'chromo' (CHRromatin Organisation MOdifier 61.5 5.2e-16 2 PF00385.14.ls 'chromo' (CHRromatin Organisation MOdifier 54.5 3.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08073.2.fs 1/1 156 210 .. 1 55 [] 133.2 6.6e-38 PF08073.2.ls 1/1 156 210 .. 1 55 [] 135.1 1.7e-37 PF00628.19.ls 1/2 386 431 .. 1 51 [] 69.4 1.1e-17 PF00628.19.fs 1/2 386 431 .. 1 51 [] 67.5 3e-21 PF00628.19.ls 2/2 463 508 .. 1 51 [] 60.1 6.6e-15 PF00628.19.fs 2/2 463 508 .. 1 51 [] 58.3 2.8e-18 PF00385.14.fs 2/2 636 688 .. 1 68 [] 52.7 1.3e-13 PF00385.14.ls 1/1 636 688 .. 1 68 [] 54.5 3.3e-13 PF00176.13.ls 1/1 744 1040 .. 1 355 [] 366.6 3.7e-107 PF00176.13.fs 1/1 744 1040 .. 1 355 [] 364.8 1.3e-106 PF00271.21.ls 1/1 1100 1179 .. 1 76 [] 101.1 3.1e-27 PF00271.21.fs 1/1 1100 1179 .. 1 76 [] 99.1 2.6e-28 PF06465.4.fs 1/1 1298 1362 .. 1 67 [] 94.3 7.5e-27 PF06465.4.ls 1/1 1298 1362 .. 1 67 [] 96.3 8.5e-26 PF06461.2.ls 1/1 1368 1524 .. 1 168 [] 320.1 3.6e-93 PF06461.2.fs 1/1 1368 1524 .. 1 168 [] 318.2 1.3e-92 PF08074.2.fs 1/1 1739 1912 .. 1 180 [] 439.5 4.2e-129 PF08074.2.ls 1/1 1739 1912 .. 1 180 [] 441.4 1.1e-129 Alignments of top-scoring domains: PF08073.2.fs: domain 1 of 1, from 156 to 210: score 133.2, E = 6.6e-38 *->VeieYsEEefqsLtnyKaFssfvrPlilkeNPkiavsKmmmllaaKw Ve+++sEE++++LtnyKaFs+f+rPli+k+NPki++sKmm++l+aKw af07308 156 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKW 202 rEFqdhnp<-* rEF+++np af07308 203 REFSANNP 210 PF08073.2.ls: domain 1 of 1, from 156 to 210: score 135.1, E = 1.7e-37 *->VeieYsEEefqsLtnyKaFssfvrPlilkeNPkiavsKmmmllaaKw Ve+++sEE++++LtnyKaFs+f+rPli+k+NPki++sKmm++l+aKw af07308 156 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKW 202 rEFqdhnp<-* rEF+++np af07308 203 REFSANNP 210 PF00628.19.ls: domain 1 of 2, from 386 to 431: score 69.4, E = 1.1e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC yC vC++ gg++++CD+C+r++Hl Cl+p l+ + pe++W C af07308 386 YCEVCQQ-----GGEIILCDTCPRAYHLVCLDPELD--RAPEgkWSC 425 peCkpk<-* p+C+ + af07308 426 PHCEKE 431 PF00628.19.fs: domain 1 of 2, from 386 to 431: score 67.5, E = 3e-21 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC yC vC++ gg++++CD+C+r++Hl Cl+p l+ + pe++W C af07308 386 YCEVCQQ-----GGEIILCDTCPRAYHLVCLDPELD--RAPEgkWSC 425 peCkpk<-* p+C+ + af07308 426 PHCEKE 431 PF00628.19.ls: domain 2 of 2, from 463 to 508: score 60.1, E = 6.6e-15 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC yC+vC++ gg+ll+CD C ++H+ Cl+ppl+ +ip ++W+C af07308 463 YCRVCKD-----GGELLCCDACISSYHIHCLNPPLP--DIPNgeWLC 502 peCkpk<-* p+C++ af07308 503 PRCTCP 508 PF00628.19.fs: domain 2 of 2, from 463 to 508: score 58.3, E = 2.8e-18 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC yC+vC++ gg+ll+CD C ++H+ Cl+ppl+ +ip ++W+C af07308 463 YCRVCKD-----GGELLCCDACISSYHIHCLNPPLP--DIPNgeWLC 502 peCkpk<-* p+C++ af07308 503 PRCTCP 508 PF00385.14.fs: domain 2 of 2, from 636 to 688: score 52.7, E = 1.3e-13 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp + V+rI++h+++k+g+ +YLVKW+++py+++TWE af07308 636 MTVHRIINHSVDKKGNY------------HYLVKWRDLPYDQSTWEE 670 ee.nLkackgfpelkieefeqr<-* e n+ + ++ + ++++ af07308 671 DEmNIPEY--EEH--KQSYWRH 688 PF00385.14.ls: domain 1 of 1, from 636 to 688: score 54.5, E = 3.3e-13 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp + V+rI++h+++k+g+ +YLVKW+++py+++TWE af07308 636 MTVHRIINHSVDKKGNY------------HYLVKWRDLPYDQSTWEE 670 ee.nLkackgfpelkieefeqr<-* e n+ + ++ + ++++ af07308 671 DEmNIPEY--EEH--KQSYWRH 688 PF00176.13.ls: domain 1 of 1, from 744 to 1040: score 366.6, E = 3.7e-107 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleG+nWL + + + g ILADEMGLGKT+QtI +l af07308 744 YQLEGLNWLRFSWAQ--------GTDTILADEMGLGKTIQTIVFLYS 782 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l+ + gpfLv +PlSt+ nW++Ef+ wap + +v y gd++s af07308 783 LYKEGHTK----GPFLVSAPLSTIINWEREFQMWAP-KFYVVTYTGDKDS 827 rdqd.............rkdellrnvlkdggrlkfdvlitsYeiirkNkL r+++++++ + +++ + +++++ + +++ +kf+vl+tsYe+i af07308 828 RAIIrenefsfednaikGGKKAFKMKREAQ--VKFHVLLTSYELITI--- 872 lkdkdeLkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLl d++ L++ i+w +++DE+ Hr+KN +Sk ++ l+ +k ++Ll af07308 873 --DQAALGS--IRWACLVVDEA-HRLKNNQSKF--FRVLNGYK-IDHKLL 914 LTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaegg LTGTPlQNnL+El+ LlnFl P +F++l + F ++f +i ++ af07308 915 LTGTPLQNNLEELFHLLNFLTPERFNNL-------EGFLEEFA-DISKED 956 dsavLadatefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpp +i+ Lh++l p +LRRlK+dv k+ p+ af07308 957 -----------------------QIKKLHDLLGPHMLRRLKADVFKNMPA 983 peKteyvlfcelsklQkelYkkflkeeskdvkaindserreggkeknegk Kte+++++els +Qk++Yk++l +++++a+n++ gg af07308 984 --KTELIVRVELSPMQKKYYKYIL---TRNFEALNSRG---GGNQ----- 1020 srllnlimqLrKicNfHPyLf<-* +lln++m L+K+cN HPyLf af07308 1021 VSLLNIMMDLKKCCN-HPYLF 1040 PF00176.13.fs: domain 1 of 1, from 744 to 1040: score 364.8, E = 1.3e-106 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleG+nWL + + + g ILADEMGLGKT+QtI +l af07308 744 YQLEGLNWLRFSWAQ--------GTDTILADEMGLGKTIQTIVFLYS 782 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l+ + gpfLv +PlSt+ nW++Ef+ wap + +v y gd++s af07308 783 LYKEGHTK----GPFLVSAPLSTIINWEREFQMWAP-KFYVVTYTGDKDS 827 rdqd.............rkdellrnvlkdggrlkfdvlitsYeiirkNkL r+++++++ + +++ + +++++ + +++ +kf+vl+tsYe+i af07308 828 RAIIrenefsfednaikGGKKAFKMKREAQ--VKFHVLLTSYELITI--- 872 lkdkdeLkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLl d++ L++ i+w +++DE+ Hr+KN +Sk ++ l+ +k ++Ll af07308 873 --DQAALGS--IRWACLVVDEA-HRLKNNQSKF--FRVLNGYK-IDHKLL 914 LTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaegg LTGTPlQNnL+El+ LlnFl P +F++l + F ++f +i ++ af07308 915 LTGTPLQNNLEELFHLLNFLTPERFNNL-------EGFLEEFA-DISKED 956 dsavLadatefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpp +i+ Lh++l p +LRRlK+dv k+ p+ af07308 957 -----------------------QIKKLHDLLGPHMLRRLKADVFKNMPA 983 peKteyvlfcelsklQkelYkkflkeeskdvkaindserreggkeknegk Kte+++++els +Qk++Yk++l +++++a+n++ gg af07308 984 --KTELIVRVELSPMQKKYYKYIL---TRNFEALNSRG---GGNQ----- 1020 srllnlimqLrKicNfHPyLf<-* +lln++m L+K+cN HPyLf af07308 1021 VSLLNIMMDLKKCCN-HPYLF 1040 PF00271.21.ls: domain 1 of 1, from 1100 to 1179: score 101.1, E = 3.1e-27 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l+++g+k+ r++Gg++ + R+e++++F++ ++ ++L++T+++g+ af07308 1100 FLdYEGYKYERIDGGITGALRQEAIDRFNAPGAqqfCFLLSTRAGGL 1146 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI++d++wnp ++iQ+ Ra+R+G af07308 1147 GINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1179 PF00271.21.fs: domain 1 of 1, from 1100 to 1179: score 99.1, E = 2.6e-28 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l+++g+k+ r++Gg++ + R+e++++F++ ++ ++L++T+++g+ af07308 1100 FLdYEGYKYERIDGGITGALRQEAIDRFNAPGAqqfCFLLSTRAGGL 1146 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI++d++wnp ++iQ+ Ra+R+G af07308 1147 GINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1179 PF06465.4.fs: domain 1 of 1, from 1298 to 1362: score 94.3, E = 7.5e-27 *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL ++++k E+ ++e+i+++ en +p+YWekLLr++yE+qQe+++++L af07308 1298 VREEDKI-EEIEREIIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNL 1342 GKRKRsRKQViYtEgttvee<-* GK+KR+RKQV+Y++ +++ af07308 1343 GKGKRVRKQVNYNDAAQEDQ 1362 PF06465.4.ls: domain 1 of 1, from 1298 to 1362: score 96.3, E = 8.5e-26 *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL ++++k E+ ++e+i+++ en +p+YWekLLr++yE+qQe+++++L af07308 1298 VREEDKI-EEIEREIIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNL 1342 GKRKRsRKQViYtEgttvee<-* GK+KR+RKQV+Y++ +++ af07308 1343 GKGKRVRKQVNYNDAAQEDQ 1362 PF06461.2.ls: domain 1 of 1, from 1368 to 1524: score 320.1, E = 3.6e-93 *->peaargLeeddeDyqrkprTvtRPYRkraRdnseekliPLmegeGry +++++ ee+deD++++p+ ++R + R++++++l+PL++++G++ af07308 1368 YSVGS--EEEDEDFDERPE-GRRQSKRQLRNEKDKPLPPLLARVGGN 1411 leVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkrYg +eVLGFN +qR++Fl++vMR+GmPPQd+f+++wlVrdLr+K+ekefk+Y+ af07308 1412 IEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1461 iLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmmLV +LF++H++E+++D+s+tF aDGVP+EGls+++vL+ri++m+LV af07308 1462 SLFMRHLCEPGADGSETF--------ADGVPREGLSRQQVLTRIGVMSLV 1503 keKvqflenhpgaPvfpeyvi<-* k+Kvq++e+ +g++++pe++ af07308 1504 KKKVQEFEHINGRWSMPELMP 1524 PF06461.2.fs: domain 1 of 1, from 1368 to 1524: score 318.2, E = 1.3e-92 *->peaargLeeddeDyqrkprTvtRPYRkraRdnseekliPLmegeGry +++++ ee+deD++++p+ ++R + R++++++l+PL++++G++ af07308 1368 YSVGS--EEEDEDFDERPE-GRRQSKRQLRNEKDKPLPPLLARVGGN 1411 leVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkrYg +eVLGFN +qR++Fl++vMR+GmPPQd+f+++wlVrdLr+K+ekefk+Y+ af07308 1412 IEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1461 iLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmmLV +LF++H++E+++D+s+tF aDGVP+EGls+++vL+ri++m+LV af07308 1462 SLFMRHLCEPGADGSETF--------ADGVPREGLSRQQVLTRIGVMSLV 1503 keKvqflenhpgaPvfpeyvi<-* k+Kvq++e+ +g++++pe++ af07308 1504 KKKVQEFEHINGRWSMPELMP 1524 PF08074.2.fs: domain 1 of 1, from 1739 to 1912: score 439.5, E = 4.2e-129 *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF Gk EIWhRRHDYWLLAg+v hGY R+Q DI+ND +F+i+NEPF af07308 1739 GKLNEIWHRRHDYWLLAGIVLHGYARWQ----DIQNDAQFAIINEPF 1781 KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq K + +nf++ KnKFLaRRFKLlEQ+LVIEEQLRRAA+lN+ q+P + af07308 1782 KTEANK--GNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAH 1829 PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD P++ L +rFae E+lAesh++++kES+aGN++ANAvLHKvL+QL+elLSD af07308 1830 PAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSD 1879 mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-* mK+DV RLPaTl++++p++ RLqMsER+ILSRL af07308 1880 MKADVTRLPATLSRIPPIAARLQMSERSILSRL 1912 PF08074.2.ls: domain 1 of 1, from 1739 to 1912: score 441.4, E = 1.1e-129 *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF Gk EIWhRRHDYWLLAg+v hGY R+Q DI+ND +F+i+NEPF af07308 1739 GKLNEIWHRRHDYWLLAGIVLHGYARWQ----DIQNDAQFAIINEPF 1781 KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq K + +nf++ KnKFLaRRFKLlEQ+LVIEEQLRRAA+lN+ q+P + af07308 1782 KTEANK--GNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAH 1829 PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD P++ L +rFae E+lAesh++++kES+aGN++ANAvLHKvL+QL+elLSD af07308 1830 PAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSD 1879 mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-* mK+DV RLPaTl++++p++ RLqMsER+ILSRL af07308 1880 MKADVTRLPATLSRIPPIAARLQMSERSILSRL 1912 //