hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-11090781/chunk_1/iprscan-20090525-11090781.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: af07308
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00249                                                 123.5    2.4e-32   2
SM00487                                                 120.5    1.9e-31   1
SM00298                                                 116.2    3.6e-30   2
SM00490                                                  99.9    2.9e-25   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00249      1/2     386   429 ..     1    39 []    63.5  2.7e-14
SM00249      2/2     463   506 ..     1    39 []    60.0  3.1e-13
SM00298      1/2     511   590 ..     1    63 []    61.3  1.2e-13
SM00298      2/2     634   683 ..     1    63 []    54.9    1e-11
SM00487      1/1     737   949 ..     1   219 []   120.5  1.9e-31
SM00490      1/1    1095  1179 ..     1    86 []    99.9  2.9e-25

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 386 to 429: score 63.5, E = 2.7e-14
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      yC+vC+++g++++Cd +C+r+yH+ Cl+p+l+++p+g+w Cp+C   
     af07308   386    YCeVCQQgGeIILCD-TCPRAYHLvCLDPELDrAPEGkWSCPHCE   429  

                   *
                    
     af07308     -   -    

SM00249: domain 2 of 2, from 463 to 506: score 60.0, E = 3.1e-13
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      yC+vC+++g+ll+Cd  C  +yH++Cl+ppl+++p+g+w+CprC+  
     af07308   463    YCrVCKDgGeLLCCD-ACISSYHIhCLNPPLPdIPNGeWLCPRCT   506  

                   *
                    
     af07308     -   -    

SM00298: domain 1 of 2, from 511 to 590: score 61.3, E = 1.2e-13
                   *->eyeivEkIldhrw........................ekkkgeveYL
                      +   v+kIl++rw++++   + +++ +++++ +++++  +++e+e++
     af07308   511    KGR-VQKILHWRWgeppvavpapqqadgnpdvppprpLQGRSEREFF 556  

                   VKWkGysysedtWEpeenleemLkkkncekkldeykkrek<-*
                   VKW+G+sy++++W +e +le       ++ ++ ++++r++   
     af07308   557 VKWVGLSYWHCSWAKELQLE------IFHLVMYRNYQRKN    590  

SM00298: domain 2 of 2, from 634 to 683: score 54.9, E = 1e-11
                   *->eyeivEkIldhrwekkkgeveYLVKWkGysysedtWEpeenleemLk
                      e+++v++I++h   +kkg+++YLVKW++++y++ tWE          
     af07308   634    EWMTVHRIINHS-VDKKGNYHYLVKWRDLPYDQSTWEE--------- 670  

                   kkncekkldeykkrek<-*
                      +e  + ey+++++   
     af07308   671 ---DEMNIPEYEEHKQ    683  

SM00487: domain 1 of 1, from 737 to 949: score 120.5, E = 1.9e-31
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      ++++l  yQ+e+++wl+    ++ d+ila+++G+GKT++ + +l  l
     af07308   737    TGgTLHMYQLEGLNWLRFSwaqgTDTILADEMGLGKTIQTIVFLYSL 783  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgv.yfv...
                    k+g+        ++++Lv +P  + +++w++e++ ++p+++v  +++++
     af07308   784 YKEGH-------TKGPFLVSAP-LSTIINWEREFQMWAPKFYVvTYTgdk 825  

                   ..........evlkvvglygG.sktkekeqlrklksgktdilvtTpgrLl
                   +++   ++++  ++  ++ gG++      ++++ ++ k+++l+t+++ + 
     af07308   826 dsraiireneFSFEDNAIKGGkK----AFKMKREAQVKFHVLLTSYELIT 871  

                   dll.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpkn
                    +      l   ++ ++++DEaHrl++++s    +f ++l+++       
     af07308   872 IDQaA---LGSiRWACLVVDEAHRLKNNQS----KFFRVLNgYKI----- 909  

                   rqrlllSATppeienllklflnlpelfpnpvfisvgf...tlepieqf<-
                    ++lll++Tp  ++n+l+++++      ++ f+++++ ++   ++e+f  
     af07308   910 DHKLLLTGTP--LQNNLEELFH------LLNFLTPERfnnLEGFLEEF   949  

                   *
                    
     af07308     -   -    

SM00490: domain 1 of 1, from 1095 to 1179: score 99.9, E = 2.9e-25
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d l+++L  +    g+k+ r++Gg++   R+e++++F++   ++ ++
     af07308  1095    DLLEDFLDYE----GYKYERIDGGITGALRQEAIDRFNAPGAqqfCF 1137 

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G+++  +d+VI++d +w+p ++iQ+  Ra+R+G   
     af07308  1138 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG    1179 

//