hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17450193/chunk_1/iprscan-20080806-17450193.nocrc
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Query sequence: af12018
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                  29.4    0.00049   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/1     841   889 ..     1    53 []    29.4  0.00049

Alignments of top-scoring domains:
SM00717: domain 1 of 1, from 841 to 889: score 29.4, E = 0.00049
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        + W   E +l+ +++++y     +d+ ++ k + ++t+ qc+e++
     af12018   841    GSDQWKMAERKLFNKGIAIYK----KDFFLVQKLIQTKTVAQCVEFY 883  

                   rnllkp<-*
                   ++++k    
     af12018   884 YTYKKQ    889  

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