hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-17514802/chunk_1/iprscan-20080806-17514802.nocrc
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Query sequence: af12619
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  38.8    7.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1    1513  1667 ..     1    92 []    38.8  7.1e-07

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 1513 to 1667: score 38.8, E = 7.1e-07
                   *->pgevvllvGppGsGKTTlaralarllgp.........gviyidge..
                       +++++l Gp+G+GKT la++la +   +++++++++ +  ++ +++
     af12619  1513    EHHRIILSGPSGTGKTYLANKLAEYVITksgrkktedAIATFNVDhk 1559 

                   ggqrirlalalark............dvlllDEitslld...........
                   + +++++ la + ++ + ++++   + v++lD +++   +++  ++ ++ 
     af12619  1560 SSKELQQYLANLAEqcsadnngvelpVVIILDNLHHVGSlsdifngflnc 1609 

                   ............................vtviattn.dldpallrrrfdr
                   + ++     +  +++ +++ +++++++ + v++++++++ ++ l r ++r
     af12619  1610 kynkcpyiigtmnqgvssspnlelhhnfRWVLCANHtEPVKGFLGRYLRR 1659 

                   rivllril<-*
                   +++   i+   
     af12619  1660 KLIEIEIE    1667 

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