hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-15380429/chunk_1/iprscan-20090630-15380429.nocrc
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Query sequence: af12940s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 205.4    5.1e-57   1
SM00326                                                  66.7    2.8e-15   1
SM00233                                                  58.0    1.2e-12   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00326     1/1     823   878 ..     1    58 []    66.7  2.8e-15
SM00325     1/1     917  1096 ..     1   211 []   205.4  5.1e-57
SM00233     1/1    1129  1236 ..     1    82 []    58.0  1.2e-12

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 823 to 878: score 66.7, E = 2.8e-15
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      + + Al+D+   +++EL Fk+GD+i+vle s+ +Ww+G+     ke 
   af12940s1   823    VCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSE--DKEA 867  

                   lfPsnYVeeie<-*
                   +fP+++V++     
   af12940s1   868 WFPASFVRLRV    878  

SM00325: domain 1 of 1, from 917 to 1096: score 205.4, E = 5.1e-57
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++E+++TEr Y+++L+ + e+++++++k        +++  ++ t+
   af12940s1   917    VIREIMDTERVYIKHLRDICEGYIRQCRKHTG-----MFTVAQLATI 958  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg Nie+iy+f+r+FL++Le+  ++ +              ++  +ig++
   af12940s1   959 FG-NIEDIYKFQRKFLKDLEKQYNKEE--------------PHLSEIGSC 993  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   Fl++   +e f iYseYc+nhp a   l+ Lm   k+ ++++f++ + + 
   af12940s1   994 FLQN---QEGFAIYSEYCNNHPGACLELANLM---KQGKYRHFFEACRLL 1037 

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   ++++     +  ++ +L++PvQ ++kYpL L ellk+t+ +h d+ ++k 
   af12940s1  1038 QQMI-----DIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSNIKA 1082 

                   AleaikelasqvNe<-*
                   A+ea+k++a  +Ne   
   af12940s1  1083 AYEAMKNVACLINE    1096 

SM00233: domain 1 of 1, from 1129 to 1236: score 58.0, E = 1.2e-12
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.......kpkgsi
                      +i++G L+k ++ ++ ++r f+Lf+++L+ +k++  +++   +kg++
   af12940s1  1129    LIHSGELTKITkQgKSQQRTFFLFDHQLVSCKKDllrrdmlYYKGRL 1175 

                   pLsgcsvre.p.............cFeivt.dr..tlllqAeseeereeW
                   +++++++++  ++++++ + + +++F++v+++ ++++l++A+ +e++ +W
   af12940s1  1176 DMDEMELVDlGdgrdkdcnlsvknAFKLVSrTTdeVYLFCAKKQEDKARW 1225 

                   vealqsaiaka<-*
                   ++a  +  ++    
   af12940s1  1226 LQACADERRRV    1236 

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