hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-18051586/chunk_1/iprscan-20080806-18051586.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af17718 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 705.0 2.1e-207 23 SM00218 176.2 3.1e-48 1 SM00005 114.3 1.4e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/23 41 70 .. 1 30 [] 1.6 2.8e+03 SM00248 2/23 74 103 .. 1 30 [] 30.4 0.00025 SM00248 3/23 107 136 .. 1 30 [] 38.1 1.2e-06 SM00248 4/23 140 169 .. 1 30 [] 38.7 7.9e-07 SM00248 5/23 173 201 .. 1 30 [] 11.2 1.5e+02 SM00248 6/23 202 231 .. 1 30 [] 10.1 2e+02 SM00248 7/23 243 272 .. 1 30 [] 33.4 3.1e-05 SM00248 8/23 276 305 .. 1 30 [] 38.1 1.2e-06 SM00248 9/23 309 338 .. 1 30 [] 35.7 6.1e-06 SM00248 10/23 342 371 .. 1 30 [] 36.9 2.7e-06 SM00248 11/23 375 404 .. 1 30 [] 33.2 3.6e-05 SM00248 12/23 408 437 .. 1 30 [] 37.6 1.7e-06 SM00248 13/23 441 470 .. 1 30 [] 33.4 3.1e-05 SM00248 14/23 474 503 .. 1 30 [] 35.3 8.1e-06 SM00248 15/23 507 536 .. 1 30 [] 26.8 0.0029 SM00248 16/23 540 569 .. 1 30 [] 27.5 0.0018 SM00248 17/23 573 602 .. 1 30 [] 32.4 6.3e-05 SM00248 18/23 606 635 .. 1 30 [] 31.1 0.00015 SM00248 19/23 639 668 .. 1 30 [] 34.9 1.1e-05 SM00248 20/23 672 701 .. 1 30 [] 38.5 9e-07 SM00248 21/23 705 734 .. 1 30 [] 25.5 0.0073 SM00248 22/23 738 767 .. 1 30 [] 36.0 5.2e-06 SM00248 23/23 771 800 .. 1 30 [] 38.5 9.1e-07 SM00218 1/1 977 1114 .. 1 115 [] 176.2 3.1e-48 SM00005 1/1 1485 1579 .. 1 108 [] 114.3 1.4e-29 Alignments of top-scoring domains: SM00248: domain 1 of 23, from 41 to 70: score 1.6, E = 2.8e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* d + + Aa+ gnl+ v + l+ g din af17718 41 DSNASFLRAARAGNLDKVVEYLKGGIDINT 70 SM00248: domain 2 of 23, from 74 to 103: score 30.4, E = 0.00025 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G ++LHlAa++g++ +v++Ll +g +++ af17718 74 NGLNALHLAAKEGHVGLVQELLGRGSSVDS 103 SM00248: domain 3 of 23, from 107 to 136: score 38.1, E = 1.2e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+LH+A g+ evvk L+++ga+ina af17718 107 KGNTALHIASLAGQAEVVKVLVKEGANINA 136 SM00248: domain 4 of 23, from 140 to 169: score 38.7, E = 7.9e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL++Aa++++++vvk+Ll++ga+ af17718 140 NGFTPLYMAAQENHIDVVKYLLENGANQST 169 SM00248: domain 5 of 23, from 173 to 201: score 11.2, E = 1.5e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+TpL +A + g+ v +Ll+++ + + af17718 173 DGFTPLAVALQQGHNQAVAILLEND-TKGK 201 SM00248: domain 6 of 23, from 202 to 231: score 10.1, E = 2e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* +LH+Aa++++ + + lLl+++ + ++ af17718 202 VRLPALHIAARKDDTKSAALLLQNDHNADV 231 SM00248: domain 7 of 23, from 243 to 272: score 33.4, E = 3.1e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa +gn++v+ lLl++ga ++ af17718 243 SGFTPLHIAAHYGNVNVATLLLNRGAAVDF 272 SM00248: domain 8 of 23, from 276 to 305: score 38.1, E = 1.2e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G TpLH+A ++gn ++vklLld+g+ i+a af17718 276 NGITPLHVASKRGNTNMVKLLLDRGGQIDA 305 SM00248: domain 9 of 23, from 309 to 338: score 35.7, E = 6.1e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG TpLH+Aa++g+ vv+lLl++ga + a af17718 309 DGLTPLHCAARSGHDQVVELLLERGAPLLA 338 SM00248: domain 10 of 23, from 342 to 371: score 36.9, E = 2.7e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G +pLH+Aa+ +++e+vk+Ll+++a +++ af17718 342 NGLSPLHMAAQGDHVECVKHLLQHKAPVDD 371 SM00248: domain 11 of 23, from 375 to 404: score 33.2, E = 3.6e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* d T+LH+Aa g++ v klLldk a++na af17718 375 DYLTALHVAAHCGHYRVTKLLLDKRANPNA 404 SM00248: domain 12 of 23, from 408 to 437: score 37.6, E = 1.7e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+A+++++++v++lL+++ga+i a af17718 408 NGFTPLHIACKKNRIKVMELLVKYGASIQA 437 SM00248: domain 13 of 23, from 441 to 470: score 33.4, E = 3.1e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G Tp+H+Aa g+l++v lLl++ga++++ af17718 441 SGLTPIHVAAFMGHLNIVLLLLQNGASPDV 470 SM00248: domain 14 of 23, from 474 to 503: score 35.3, E = 8.1e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* G T+LH+Aa+ g++evv++Ll++ga ++a af17718 474 RGETALHMAARAGQVEVVRCLLRNGALVDA 503 SM00248: domain 15 of 23, from 507 to 536: score 26.8, E = 0.0029 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +TpLH+A + g e+v+lLl++ a ++a af17718 507 EEQTPLHIASRLGKTEIVQLLLQHMAHPDA 536 SM00248: domain 16 of 23, from 540 to 569: score 27.5, E = 0.0018 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+ a++g+++v+ Ll++ga + af17718 540 NGYTPLHISAREGQVDVASVLLEAGAAHSL 569 SM00248: domain 17 of 23, from 573 to 602: score 32.4, E = 6.3e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa++g+l+v+klLl++ a + af17718 573 KGFTPLHVAAKYGSLDVAKLLLQRRAAADS 602 SM00248: domain 18 of 23, from 606 to 635: score 31.1, E = 0.00015 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G TpLH+Aa ++n +v+ lLl+kga+++a af17718 606 NGLTPLHVAAHYDNQKVALLLLEKGASPHA 635 SM00248: domain 19 of 23, from 639 to 668: score 34.9, E = 1.1e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+Aa+++++ ++ Ll++ga+ n+ af17718 639 NGYTPLHIAAKKNQMQIASTLLNYGAETNI 668 SM00248: domain 20 of 23, from 672 to 701: score 38.5, E = 9e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G TpLHlA ++g+ ++v lLldkga+i++ af17718 672 QGVTPLHLASQEGHTDMVTLLLDKGANIHM 701 SM00248: domain 21 of 23, from 705 to 734: score 25.5, E = 0.0073 *->dGrTpLHlAaengnlevvklLldkgadina<-* G T LHlAa+++ ++v+ +L ++gad +a af17718 705 SGLTSLHLAAQEDKVNVADILTKHGADQDA 734 SM00248: domain 22 of 23, from 738 to 767: score 36.0, E = 5.2e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpL +A+ +gn+++v++Ll+ ga++na af17718 738 LGYTPLIVACHYGNVKMVNFLLKQGANVNA 767 SM00248: domain 23 of 23, from 771 to 800: score 38.5, E = 9.1e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH Aa+ g+ ++++ Ll++ga +na af17718 771 NGYTPLHQAAQQGHTHIINVLLQHGAKPNA 800 SM00218: domain 1 of 1, from 977 to 1114: score 176.2, E = 3.1e-48 *->psflvsgtvdsrGGrLrgprHsGvrliiPpgAipqGtryecYlvvhk ++flvs++vd+rGG++rg+rH+G+r+iiPp++++++tr++c+lv+++ af17718 977 SGFLVSFMVDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLVKRH 1023 klstpPPLDkeegEtLLSPvvecGPCDVS..................... +l+t+PP+ +egE+L+S+++e+GP S+ + ++ + ++ +++ ++++ af17718 1024 RLATMPPM--VEGEGLASRLIEVGP---Sgaqflgklhlptappplnege 1068 ........mSAhGalllrPViLevpHCAslrprdkwelvllrsengg<-* + ++ ++ +G ++l+PVi+e+pH+A+lr ++ +elv+lrseng+ af17718 1069 slvsrilqLGPPGTKFLGPVIVEIPHFAALRGKE-RELVVLRSENGD 1114 SM00005: domain 1 of 1, from 1485 to 1579: score 114.3, E = 1.4e-29 *->pagaaslteltreklaklldhpldlgddWreLArkLglseaeidqie ++++++e+++e+la+++dh lg +W+eLAr+L+++e++i qi+ af17718 1485 EKNPQDEQERIEERLAYIADH---LGFSWTELARELDFTEEQIHQIR 1528 tesprelnAyyeddlreqsyqlLrlWeqregkneqatlgtLleaLrkmgr e+p+ +l++qs++lL+ W r+gk+ at +L+e+L+k++r af17718 1529 IENPN--------SLQDQSHALLKYWLERDGKH--ATDTNLVECLTKINR 1568 ddavellrsel<-* d+v l++++ af17718 1569 MDIVHLMETNT 1579 //