hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18111875/chunk_1/iprscan-20080806-18111875.nocrc
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Query sequence: af25953
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02179.6.fs BAG domain                                     109.1    7.7e-31   1
PF02179.6.ls BAG domain                                     111.0    3.2e-30   1
PF00397.16.fs WW domain                                       42.1    8.2e-11   1
PF00397.16.ls WW domain                                       44.1    4.4e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00397.16.fs   1/1      94   124 ..     1    30 []    42.1  8.2e-11
PF00397.16.ls   1/1      94   124 ..     1    30 []    44.1  4.4e-10
PF02179.6.fs   1/1     493   570 ..     1    90 []   109.1  7.7e-31
PF02179.6.ls   1/1     493   570 ..     1    90 []   111.0  3.2e-30

Alignments of top-scoring domains:
PF00397.16.fs: domain 1 of 1, from 94 to 124: score 42.1, E = 8.2e-11
                   *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-*
                      lppgWe  +d++ G p++++hn++tT+W +P   
     af25953    94    LPPGWEIKIDpQTGWPFFVDHNSRTTTWNDP    124  

PF00397.16.ls: domain 1 of 1, from 94 to 124: score 44.1, E = 4.4e-10
                   *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-*
                      lppgWe  +d++ G p++++hn++tT+W +P   
     af25953    94    LPPGWEIKIDpQTGWPFFVDHNSRTTTWNDP    124  

PF02179.6.fs: domain 1 of 1, from 493 to 570: score 109.1, E = 7.7e-31
                   *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl
                       + k++++l++V    +++eq+v++  ++gkk+dk+yl+++E+L+k+
     af25953   493    GVLKVEAILEKV----QGLEQAVDN--FEGKKTDKKYLMIEEYLTKE 533  

                   LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-*
                   Ll+LDs vd+eg+a     d+R+aR++ vrk+q++Lekl++k+   
     af25953   534 LLALDS-VDPEGRA-----DVRQARRDGVRKVQTILEKLEQKA    570  

PF02179.6.ls: domain 1 of 1, from 493 to 570: score 111.0, E = 3.2e-30
                   *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl
                       + k++++l++V    +++eq+v++  ++gkk+dk+yl+++E+L+k+
     af25953   493    GVLKVEAILEKV----QGLEQAVDN--FEGKKTDKKYLMIEEYLTKE 533  

                   LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-*
                   Ll+LDs vd+eg+a     d+R+aR++ vrk+q++Lekl++k+   
     af25953   534 LLALDS-VDPEGRA-----DVRQARRDGVRKVQTILEKLEQKA    570  

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