hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18111875/chunk_1/iprscan-20080806-18111875.nocrc
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Query sequence: af25953
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00264                                                 103.8    1.9e-26   1
SM00456                                                  53.7    2.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/1      93   126 ..     1    34 []    53.7  2.3e-11
SM00264    1/1     493   570 ..     1    91 []   103.8  1.9e-26

Alignments of top-scoring domains:
SM00456: domain 1 of 1, from 93 to 126: score 53.7, E = 2.3e-11
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plPpgWe  +dp++G p++++h++++t+W +Pr    
     af25953    93    PLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRV    126  

SM00264: domain 1 of 1, from 493 to 570: score 103.8, E = 1.9e-26
                   *->siakinevlgeVlKlerkieqevqssdfdgkkddkeylmlsElLmkl
                       ++k++++l++V    +++eq+v++  f+gkk+dk+ylm++E+L+k+
     af25953   493    GVLKVEAILEKV----QGLEQAVDN--FEGKKTDKKYLMIEEYLTKE 533  

                   LlkLDsmlvdvegraEslaediReaRKrlvreiqklLkklDslk<-*
                   Ll+LDs  vd+egra     d+R+aR+  vr++q++L+kl++++   
     af25953   534 LLALDS--VDPEGRA-----DVRQARRDGVRKVQTILEKLEQKA    570  

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