hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-18164251/chunk_1/iprscan-20080806-18164251.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: af26404 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 323.7 2.9e-94 3 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 317.8 1.8e-92 3 PF00625.11.ls Guanylate kinase 226.6 5e-65 1 PF00625.11.fs Guanylate kinase 224.7 1.9e-64 1 PF00018.18.fs SH3 domain 28.6 4.9e-07 1 PF07653.7.fs Variant SH3 domain 24.8 1.7e-06 1 PF07653.7.ls Variant SH3 domain 26.7 7.8e-05 1 PF00018.18.ls SH3 domain 18.9 0.0002 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/3 79 163 .. 1 86 [] 111.7 2e-30 PF00595.14.fs 1/3 79 163 .. 1 86 [] 109.7 3.5e-30 PF00595.14.fs 2/3 174 258 .. 1 86 [] 104.7 9e-29 PF00595.14.ls 2/3 174 258 .. 1 86 [] 106.6 6.6e-29 PF00595.14.ls 3/3 327 405 .. 1 86 [] 105.4 1.5e-28 PF00595.14.fs 3/3 327 405 .. 1 86 [] 103.5 1.9e-28 PF00018.18.ls 1/1 445 508 .. 1 59 [] 18.9 0.0002 PF00018.18.fs 1/1 445 489 .. 1 41 [. 28.6 4.9e-07 PF07653.7.ls 1/1 446 510 .. 1 69 [] 26.7 7.8e-05 PF07653.7.fs 1/1 446 510 .. 1 69 [] 24.8 1.7e-06 PF00625.11.fs 1/1 581 683 .. 1 107 [] 224.7 1.9e-64 PF00625.11.ls 1/1 581 683 .. 1 107 [] 226.6 5e-65 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 3, from 79 to 163: score 111.7, E = 2e-30 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e+tle+ +++glGfsi+gg+d+++ ++d++if+++++pG gaA+++ af26404 79 EITLER--GNSGLGFSIAGGTDNPHigdDPSIFITKIIPG-GAAAQD 122 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GrL+++D Il vN +d++ ++h av+alk++g+ v+L v+ af26404 123 GRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVM 163 PF00595.14.fs: domain 1 of 3, from 79 to 163: score 109.7, E = 3.5e-30 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e+tle+ +++glGfsi+gg+d+++ ++d++if+++++pG gaA+++ af26404 79 EITLER--GNSGLGFSIAGGTDNPHigdDPSIFITKIIPG-GAAAQD 122 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GrL+++D Il vN +d++ ++h av+alk++g+ v+L v+ af26404 123 GRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVM 163 PF00595.14.fs: domain 2 of 3, from 174 to 258: score 104.7, E = 9e-29 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e++l k ++ glGfsi+gg ++++ ++d++i+v+++++G gaA+++ af26404 174 EIKLIK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIEG-GAAHKD 217 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GrLq+GD+Il+vN + le++ he+av+alk++ + +v L+v+ af26404 218 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD-VVYLKVA 258 PF00595.14.ls: domain 2 of 3, from 174 to 258: score 106.6, E = 6.6e-29 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e++l k ++ glGfsi+gg ++++ ++d++i+v+++++G gaA+++ af26404 174 EIKLIK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIEG-GAAHKD 217 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GrLq+GD+Il+vN + le++ he+av+alk++ + +v L+v+ af26404 218 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD-VVYLKVA 258 PF00595.14.ls: domain 3 of 3, from 327 to 405: score 105.4, E = 1.5e-28 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +++++ + glGf+i+gg+d+ +gif+s +l+G g+A+ +G+L af26404 327 RIVIHR--GSTGLGFNIVGGEDG---EGIFISFILAG-GPADLSGEL 367 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqIlsvNG+dl+n she+a++alk++g+ +vt+ + af26404 368 RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQ 405 PF00595.14.fs: domain 3 of 3, from 327 to 405: score 103.5, E = 1.9e-28 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +++++ + glGf+i+gg+d+ +gif+s +l+G g+A+ +G+L af26404 327 RIVIHR--GSTGLGFNIVGGEDG---EGIFISFILAG-GPADLSGEL 367 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqIlsvNG+dl+n she+a++alk++g+ +vt+ + af26404 368 RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQ 405 PF00018.18.ls: domain 1 of 1, from 445 to 508: score 18.9, E = 0.0002 *->kkvvALYDYeare.....sdELsFkkGDvitvleksddpgWWkgrlk + +AL+DY+++ + + s+ LsF+ GDv++v++ sd+ +WW +r+ af26404 445 FYIRALFDYDKTKdcgflSQALSFRFGDVLHVIDASDE-EWWQARRV 490 gtgG....keGliPsNYVepv<-* + +++++ G+iPs + v af26404 491 HS-DsetdDIGFIPSK--RRV 508 PF00018.18.fs: domain 1 of 1, from 445 to 489: score 28.6, E = 4.9e-07 *->kkvvALYDYeare.....sdELsFkkGDvitvleksddpgWWkgrl< + +AL+DY+++ + + s+ LsF+ GDv++v++ sd+ +WW +r+ af26404 445 FYIRALFDYDKTKdcgflSQALSFRFGDVLHVIDASDE-EWWQARR 489 -* af26404 - - PF07653.7.ls: domain 1 of 1, from 446 to 510: score 26.7, E = 7.8e-05 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidvggskdddgww y+ra++dy+ t+d++ + Ls++ Gdv++Vi + +d++ww af26404 446 YIRALFDYDK-TkDCGF--LSQALSFRFGDVLHVI----DASDEEWW 485 egeslgg.....GrrrRGlvPssaveel<-* ++++ ++++++ G++Ps+ + e af26404 486 QARR-VHsdsetDDI--GFIPSKRRVER 510 PF07653.7.fs: domain 1 of 1, from 446 to 510: score 24.8, E = 1.7e-06 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidvggskdddgww y+ra++dy+ t+d++ + Ls++ Gdv++Vi + +d++ww af26404 446 YIRALFDYDK-TkDCGF--LSQALSFRFGDVLHVI----DASDEEWW 485 egeslgg.....GrrrRGlvPssaveel<-* ++++ ++++++ G++Ps+ + e af26404 486 QARR-VHsdsetDDI--GFIPSKRRVER 510 PF00625.11.fs: domain 1 of 1, from 581 to 683: score 224.7, E = 1.9e-64 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TRp+R++E+dG+DYhFVsSrE+mekdI+a++F+E++++n+++YGTs+ af26404 581 TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSV 627 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL ++Vr+va++Gk+ciLDv++++v++l++a+l+ P+++FI+P+S le++L af26404 628 QSVREVAEQGKHCILDVSANAVRRLQAAHLH-PIAIFIRPRS---LENVL 673 rgrnketEEs<-* ++++++tEE+ af26404 674 EINKRITEEQ 683 PF00625.11.ls: domain 1 of 1, from 581 to 683: score 226.6, E = 5e-65 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TRp+R++E+dG+DYhFVsSrE+mekdI+a++F+E++++n+++YGTs+ af26404 581 TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSV 627 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL ++Vr+va++Gk+ciLDv++++v++l++a+l+ P+++FI+P+S le++L af26404 628 QSVREVAEQGKHCILDVSANAVRRLQAAHLH-PIAIFIRPRS---LENVL 673 rgrnketEEs<-* ++++++tEE+ af26404 674 EINKRITEEQ 683 //