hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18164251/chunk_1/iprscan-20080806-18164251.nocrc
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Query sequence: af26404
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 272.5    3.2e-77   3
SM00072                                                 242.0      5e-68   1
SM00326                                                  47.4    1.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/3      87   166 ..     1    80 []    86.0  4.6e-21
SM00228    2/3     182   261 ..     1    80 []    87.6  1.5e-21
SM00228    3/3     335   408 ..     1    80 []    99.0  5.5e-25
SM00326    1/1     445   511 ..     1    58 []    47.4  1.9e-09
SM00072    1/1     547   726 ..     1   203 []   242.0    5e-68

Alignments of top-scoring domains:
SM00228: domain 1 of 3, from 87 to 166: score 86.0, E = 4.6e-21
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                       glGfsi+g++++++ ++++ if+++++pG++Aa++Gr     L+v+
     af26404    87    SGLGFSIAGgtdnphigddpSIFITKIIPGGAAAQDGR-----LRVN 128  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D Il VN  ++v+ +th  av++lk+ag       v+L v R++   
     af26404   129 DSILFVNE-VDVREVTHSAAVEALKEAGS-----IVRLYVMRRK    166  

SM00228: domain 2 of 3, from 182 to 261: score 87.6, E = 1.5e-21
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                      +glGfsi+g+ ++++ ++++ i+v+++++G++A+k+Gr     L++G
     af26404   182    KGLGFSIAGgvgnqhipgdnSIYVTKIIEGGAAHKDGR-----LQIG 223  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D+Il+VN  + +e++ he+av++lk++ +     +v L+v +++   
     af26404   224 DKILAVNS-VGLEDVMHEDAVAALKNTYD-----VVYLKVAKPS    261  

SM00228: domain 3 of 3, from 335 to 408: score 99.0, E = 5.5e-25
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                       glGf+ivg+++++gif+s +++G+pA+ +G      L++GD+Il+V
     af26404   335    TGLGFNIVGgedgeGIFISFILAGGPADLSGE-----LRKGDQILSV 376  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   NG +++++++he+a+++lk+ag+     +vt++ ++++   
     af26404   377 NG-VDLRNASHEQAAIALKNAGQ-----TVTIIAQYKP    408  

SM00326: domain 1 of 1, from 445 to 511: score 47.4, E = 1.9e-09
                   *->eyvvAlYDyea.....qnedELsFkkGDiitvleksddgWweGelnr
                      +y +Al+Dy+ +++ +  ++ LsF+ GD+++v++ sd++Ww++++ +
     af26404   445    FYIRALFDYDKtkdcgFLSQALSFRFGDVLHVIDASDEEWWQARRVH 491  

                   ....tGkeGlfPsnYVeeie<-*
                   ++++t  +G++Ps    e +   
     af26404   492 sdseTDDIGFIPSKRRVERR    511  

SM00072: domain 1 of 1, from 547 to 726: score 242.0, E = 5e-68
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + Rpi+++Gp    K++ +++Ll+e+Pd  kfg +V+hTTRp+R++E
     af26404   547    YARPIIILGP---TKDRANDDLLSEFPD--KFGSCVPHTTRPKREYE 588  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   ++G  +DYhFvs++e++e+di+++kf+E g+y+++ +YGTs++svr+vae
     af26404   589 IDG--RDYHFVSSREKMEKDIQAHKFIEAGQYNSH-LYGTSVQSVREVAE 635  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgaeq
                   +GKhc+LD++ ++v++l++a    +l+pi iFI+p sle ++e ++    
     af26404   636 QGKHCILDVSANAVRRLQAA----HLHPIAIFIRPRSLENVLEINKR--- 678  

                   RgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLke
                    ++e++++  +r+    ++e+ e+      F +++ +d++e++y ++ k 
     af26404   679 ITEEQARKAFDRATK-LEQEFTEC------FSAIVEGDSFEEIY-HKVKR 720  

                   ileaeq<-*
                   ++e++    
     af26404   721 VIEDLS    726  

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