hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18231819/chunk_1/iprscan-20080806-18231819.nocrc
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Query sequence: af29273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01412.9.fs Putative GTPase activating protein for Arf     168.8      3e-48   1
PF01412.9.ls Putative GTPase activating protein for Arf     170.7    3.5e-48   1
PF00169.19.fs PH domain                                       63.9    5.4e-19   1
PF00169.19.ls PH domain                                       65.9    1.2e-16   1
PF00023.20.fs Ankyrin repeat                                  48.7    1.4e-12   2
PF00023.20.ls Ankyrin repeat                                  39.0    1.5e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.ls   1/1     160   345 ..     1    92 []    65.9  1.2e-16
PF00169.19.fs   1/1     160   345 ..     1    92 []    63.9  5.4e-19
PF01412.9.ls   1/1     366   486 ..     1   137 []   170.7  3.5e-48
PF01412.9.fs   1/1     366   486 ..     1   137 []   168.8    3e-48
PF00023.20.fs   1/2     525   557 ..     1    33 []    37.0  2.5e-09
PF00023.20.ls   1/2     525   557 ..     1    33 []    39.0  1.5e-08
PF00023.20.ls   2/2     558   586 ..     1    33 []     0.0       29
PF00023.20.fs   2/2     558   583 ..     1    26 [.    11.7    0.028

Alignments of top-scoring domains:
PF00169.19.ls: domain 1 of 1, from 160 to 345: score 65.9, E = 1.2e-16
                   *->vikeGwLlkkg..gkkswkkRyfvLfd.dvLlyykdkk....kkpkg
                      +ik+G Llk++++++k+wkk y++L++++vL+yy + ++  +  +k+
     af29273   160    PIKQGMLLKRSgkWLKTWKKKYVTLCSnGVLTYYSSLGdymkNIHKK 206  

                   sipLsgiqvtkvpdn...................................
                    i+L++++++ + + ++  ++   + +++++++ +++ +  + + +++ +
     af29273   207 EIDLRTSTIKVPGKWpslatsacapisssksnglskdmealhmsansdig 256  

                   ..................................................
                    +++   +++ +++++++ + +++++ +++++ +++++++ ++++ +++ 
     af29273   257 lgdsicfspsissttspklnlppsphankkkhlkkkstnnlkddglssta 306  

                   .krkncFeirt.dretlllqaeseeerkeWvkaiqsair<-*
                   ++++  F i++ +++t +++a+++eer  Wv+aiqs+i    
     af29273   307 eEEEEKFMIVSvTGQTCHFKATTYEERDAWVQAIQSQIL    345  

PF00169.19.fs: domain 1 of 1, from 160 to 345: score 63.9, E = 5.4e-19
                   *->vikeGwLlkkg..gkkswkkRyfvLfd.dvLlyykdkk....kkpkg
                      +ik+G Llk++++++k+wkk y++L++++vL+yy + ++  +  +k+
     af29273   160    PIKQGMLLKRSgkWLKTWKKKYVTLCSnGVLTYYSSLGdymkNIHKK 206  

                   sipLsgiqvtkvpdn...................................
                    i+L++++++ + + ++  ++   + +++++++ +++ +  + + +++ +
     af29273   207 EIDLRTSTIKVPGKWpslatsacapisssksnglskdmealhmsansdig 256  

                   ..................................................
                    +++   +++ +++++++ + +++++ +++++ +++++++ ++++ +++ 
     af29273   257 lgdsicfspsissttspklnlppsphankkkhlkkkstnnlkddglssta 306  

                   .krkncFeirt.dretlllqaeseeerkeWvkaiqsair<-*
                   ++++  F i++ +++t +++a+++eer  Wv+aiqs+i    
     af29273   307 eEEEEKFMIVSvTGQTCHFKATTYEERDAWVQAIQSQIL    345  

PF01412.9.ls: domain 1 of 1, from 366 to 486: score 170.7, E = 3.5e-48
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                      + +lq +++ + gN++C DC    nP WaS+nlGv+ CieCSGiHR+
     af29273   366    AMALQSIQNMR-GNSHCVDCET-QNPKWASLNLGVLMCIECSGIHRS 410  

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L G+ +S+V  RSl LD W+  elrk++s  +GN+ ans+wE+    + +
     af29273   411 L-GTRLSRV--RSLELDDWPV-ELRKVMS-SIGNDLANSIWEGSSQGQTK 455  

                   kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   ++  s          r+++e +i+ KYe klf+ ++++ e   
     af29273   456 PSIEST---------REEKERWIRSKYEHKLFLAPLPCTE    486  

PF01412.9.fs: domain 1 of 1, from 366 to 486: score 168.8, E = 3e-48
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                      + +lq +++ + gN++C DC    nP WaS+nlGv+ CieCSGiHR+
     af29273   366    AMALQSIQNMR-GNSHCVDCET-QNPKWASLNLGVLMCIECSGIHRS 410  

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L G+ +S+V  RSl LD W+  elrk++s  +GN+ ans+wE+    + +
     af29273   411 L-GTRLSRV--RSLELDDWPV-ELRKVMS-SIGNDLANSIWEGSSQGQTK 455  

                   kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   ++  s          r+++e +i+ KYe klf+ ++++ e   
     af29273   456 PSIEST---------REEKERWIRSKYEHKLFLAPLPCTE    486  

PF00023.20.fs: domain 1 of 2, from 525 to 557: score 37.0, E = 2.5e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+T+LHlA+++gn+ +++lL+ +G d+ a+d    
     af29273   525    DGCTALHLACRKGNVVLAQLLIWYGVDVMARDA    557  

PF00023.20.ls: domain 1 of 2, from 525 to 557: score 39.0, E = 1.5e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+T+LHlA+++gn+ +++lL+ +G d+ a+d    
     af29273   525    DGCTALHLACRKGNVVLAQLLIWYGVDVMARDA    557  

PF00023.20.ls: domain 2 of 2, from 558 to 586: score 0.0, E = 29
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T+L +A +  + e++  Ll+        d    
     af29273   558    HGNTALTYARQASSQECINVLLQ----YGCPDE    586  

PF00023.20.fs: domain 2 of 2, from 558 to 583: score 11.7, E = 0.028
                   *->dGfTPLHlAalrgnlevvklLlsqGA<-*
                      +G+T+L +A +  + e++  Ll++G+   
     af29273   558    HGNTALTYARQASSQECINVLLQYGC    583  

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