hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18231819/chunk_1/iprscan-20080806-18231819.nocrc
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Query sequence: af29273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 171.3    9.4e-47   1
SM00233                                                  77.1    2.2e-18   1
SM00248                                                  38.0    1.3e-06   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     160   347 ..     1    82 []    77.1  2.2e-18
SM00105     1/1     366   486 ..     1   139 []   171.3  9.4e-47
SM00248     1/2     525   554 ..     1    30 []    26.1   0.0047
SM00248     2/2     558   587 ..     1    30 []    11.8       95

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 160 to 347: score 77.1, E = 2.2e-18
                   *->vikeGwLlkks...k.swkkryfvLfn.gvLlyyksk......kpkg
                      +ik+G Llk+s++ +++wkk+y++L+++gvL+yy s ++  ++ +k+
     af29273   160    PIKQGMLLKRSgkwLkTWKKKYVTLCSnGVLTYYSSLgdymknIHKK 206  

                   sipLsgcsvre.p.....................................
                   +i+L++ +++++ + ++   +   + +++++++ +++ +  + + +++ +
     af29273   207 EIDLRTSTIKVpGkwpslatsacapisssksnglskdmealhmsansdig 256  

                   ..................................................
                    +++   +++ ++  +++ + +++++ +++++ ++++ ++ ++++ ++  
     af29273   257 lgdsicfspsissttspklnlppsphankkkhlkkkstnnlkddglssta 306  

                   .....cFeivt.dr.tlllqAeseeereeWvealqsaiaka<-*
                   +++++ F iv+ +++t +++A + eer+ Wv+a+qs i  +   
     af29273   307 eeeeeKFMIVSvTGqTCHFKATTYEERDAWVQAIQSQILAS    347  

SM00105: domain 1 of 1, from 366 to 486: score 171.3, E = 9.4e-47
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                      + alq++++++ gN++C+DC+   nP WaS+nlGv+ CieCSGiHRs
     af29273   366    AMALQSIQNMR-GNSHCVDCET-QNPKWASLNLGVLMCIECSGIHRS 410  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L G+ +S+V  RSl LD+W+  eLr+++s  +GN+ ans+we+    + +
     af29273   411 L-GTRLSRV--RSLELDDWPV-ELRKVMS-SIGNDLANSIWEGSSQGQTK 455  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                   ++  s           r+++e +i+ KYe klf + ++++ e   
     af29273   456 PSIES----------TREEKERWIRSKYEHKLF-LAPLPCTE    486  

SM00248: domain 1 of 2, from 525 to 554: score 26.1, E = 0.0047
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+T+LHlA+++gn+ +++lL+ +g+d+ a   
     af29273   525    DGCTALHLACRKGNVVLAQLLIWYGVDVMA    554  

SM00248: domain 2 of 2, from 558 to 587: score 11.8, E = 95
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+T+L +A +  + e+++ Ll++g   ++   
     af29273   558    HGNTALTYARQASSQECINVLLQYGCPDEC    587  

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