hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18303949/chunk_1/iprscan-20080806-18303949.nocrc
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Query sequence: af32513
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF02210.14.fs Laminin G domain                            183.9    2.5e-53   2
PF02210.14.ls Laminin G domain                            187.7    2.6e-53   2
PF00054.13.fs Laminin G domain                            102.9    3.5e-29   2
PF00054.13.ls Laminin G domain                            105.4    1.5e-28   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02210.14.fs   1/2      90   213 ..     1   141 []    85.5  1.3e-24
PF00054.13.ls   1/2      90   216 ..     1   159 []    88.2  2.4e-23
PF00054.13.fs   1/2      90   216 ..     1   159 []    86.3    2e-24
PF02210.14.ls   1/2      90   213 ..     1   141 []    87.4  4.1e-23
PF02210.14.ls   2/2     265   398 ..     1   141 []   100.3  5.3e-27
PF02210.14.fs   2/2     265   398 ..     1   141 []    98.4  2.3e-28

Alignments of top-scoring domains:
PF02210.14.fs: domain 1 of 2, from 90 to 213: score 85.5, E = 1.3e-24
                   *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl
                      F T  qp++lLl a+g  +           +l L+L  Grl++r+ l
     af32513    90    FST-SQPEALLLLAAGPaD-----------HLLLQLYSGRLQVRLVL 124  

                   G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss
                   G+ + ++++  ++ l+D   HtV+++  ++ +tLsVDg  ++++  pg  
     af32513   125 GqEELrLQTPAEtLLSDSIPHTVVLTVVEGWATLSVDGFlNAsSaVPGA- 173  

                   dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin
                       l++++ l++GG    + ++l  +         s++++GC+   ++n
     af32513   174 ---PLEVPYGLFVGGTGTLGLPYLRGT---------SrPLRGCLHAATLN 211  

                   ge<-*
                   g+   
     af32513   212 GR    213  

PF00054.13.ls: domain 1 of 2, from 90 to 216: score 88.2, E = 2.4e-23
                   *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl
                      F+T++p++lLl  +++  +++          l+l+L  Grl+v++ l
     af32513    90    FSTSQPEALLL--LAAGPADH----------LLLQLYSGRLQVRLVL 124  

                   GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG
                   G+   +  ++++++++l+D+  H+v+l+ ++ ++tLsVdg  +       
     af32513   125 GQE--ELRLQTPAETLLSDSIPHTVVLTVVEGWATLSVDGFLN------- 165  

                   svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC
                        +s +++      L v++ L+vGG     +  +++    s++++GC
     af32513   166 ----ASSAVPGAP----LEVPYGLFVGGTG---TLGLPYLRGTSRPLRGC 204  

                   irdviingkpld<-*
                   ++   +ng+ l+   
     af32513   205 LHAATLNGRSLL    216  

PF00054.13.fs: domain 1 of 2, from 90 to 216: score 86.3, E = 2e-24
                   *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl
                      F+T++p++lLl  +++  +++          l+l+L  Grl+v++ l
     af32513    90    FSTSQPEALLL--LAAGPADH----------LLLQLYSGRLQVRLVL 124  

                   GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG
                   G+   +  ++++++++l+D+  H+v+l+ ++ ++tLsVdg  +       
     af32513   125 GQE--ELRLQTPAETLLSDSIPHTVVLTVVEGWATLSVDGFLN------- 165  

                   svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC
                        +s +++      L v++ L+vGG     +  +++    s++++GC
     af32513   166 ----ASSAVPGAP----LEVPYGLFVGGTG---TLGLPYLRGTSRPLRGC 204  

                   irdviingkpld<-*
                   ++   +ng+ l+   
     af32513   205 LHAATLNGRSLL    216  

PF02210.14.ls: domain 1 of 2, from 90 to 213: score 87.4, E = 4.1e-23
                   *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl
                      F T  qp++lLl a+g  +           +l L+L  Grl++r+ l
     af32513    90    FST-SQPEALLLLAAGPaD-----------HLLLQLYSGRLQVRLVL 124  

                   G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss
                   G+ + ++++  ++ l+D   HtV+++  ++ +tLsVDg  ++++  pg  
     af32513   125 GqEELrLQTPAEtLLSDSIPHTVVLTVVEGWATLSVDGFlNAsSaVPGA- 173  

                   dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin
                       l++++ l++GG    + ++l  +         s++++GC+   ++n
     af32513   174 ---PLEVPYGLFVGGTGTLGLPYLRGT---------SrPLRGCLHAATLN 211  

                   ge<-*
                   g+   
     af32513   212 GR    213  

PF02210.14.ls: domain 2 of 2, from 265 to 398: score 100.3, E = 5.3e-27
                   *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl
                      + T  + ++ L +++g++         +d f+ + + +G+l+ +++ 
     af32513   265    LTT-QSRQAPLAFQAGGrR--------GD-FIYVDIFEGHLRAVVEK 301  

                   Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd
                   G +g+vll  + p++DGq H Vsv++n +++++sVD++++++++++  s 
     af32513   302 G-QGtVLLHNSvPVADGQPHEVSVHINAHRLEISVDQYpTHtSnRGVLS- 349  

                   tlslnlngplylGGlpesskssllrliaaqn.lvt.vsgFvGCirnvrin
                     +l++ g+l lGGl  +++++l+ +++  ++++t++ ++ GC++++ +n
     af32513   350 --YLEPRGSLLLGGLDAEASRHLQEHRLGLTpEATnA-SLLGCMEDLSVN 396  

                   ge<-*
                   g+   
     af32513   397 GQ    398  

PF02210.14.fs: domain 2 of 2, from 265 to 398: score 98.4, E = 2.3e-28
                   *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl
                      + T  + ++ L +++g++         +d f+ + + +G+l+ +++ 
     af32513   265    LTT-QSRQAPLAFQAGGrR--------GD-FIYVDIFEGHLRAVVEK 301  

                   Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd
                   G +g+vll  + p++DGq H Vsv++n +++++sVD++++++++++  s 
     af32513   302 G-QGtVLLHNSvPVADGQPHEVSVHINAHRLEISVDQYpTHtSnRGVLS- 349  

                   tlslnlngplylGGlpesskssllrliaaqn.lvt.vsgFvGCirnvrin
                     +l++ g+l lGGl  +++++l+ +++  ++++t++ ++ GC++++ +n
     af32513   350 --YLEPRGSLLLGGLDAEASRHLQEHRLGLTpEATnA-SLLGCMEDLSVN 396  

                   ge<-*
                   g+   
     af32513   397 GQ    398  

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