hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18303949/chunk_1/iprscan-20080806-18303949.nocrc
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Query sequence: af32513
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 180.9    1.2e-49   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00282    1/2      82   213 ..     1   137 []    80.7  1.8e-19
SM00282    2/2     257   398 ..     1   137 []   100.2  2.3e-25

Alignments of top-scoring domains:
SM00282: domain 1 of 2, from 82 to 213: score 80.7, E = 1.8e-19
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      t+ +++++F T +p++lLl a+++ d+l l+L+       Grl++r+
     af32513    82    TdIDLQLQFSTSQPEALLLLAAgPADHLLLQLY------SGRLQVRL 122  

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.gnp
                    lG     ++ rl+++   +t l+D  +H+V+++  ++ +tLsVDg  n 
     af32513   123 VLGQ----EELRLQTPA--ETLLSDSIPHTVVLTVVEGWATLSVDGfLNA 166  

                   vsges.t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrvng
                    s++ + +L+++      l++GG+   + +    +s ++rGC+   ++ng
     af32513   167 SSAVPgApLEVP----YGLFVGGTGTlglpylRGTSRPLRGCLHAATLNG 212  

                   k<-*
                   +   
     af32513   213 R    213  

SM00282: domain 2 of 2, from 257 to 398: score 100.2, E = 2.3e-25
                   *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl
                      ++++++f++ T+s ++ L + +++++gdf+ + +       +G+l+ 
     af32513   257    DeGTLEFTLTTQSRQAPLAFQAggrRGDFIYVDIF------EGHLRA 297  

                   rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn
                   +++ G     g++ l+ +    +p++DGq+H Vsv +n +++++sVD + 
     af32513   298 VVEKGQ----GTVLLHNS----VPVADGQPHEVSVHINAHRLEISVD-QY 338  

                   pvsges....t.LdldkeesgplylGGlPe...............lpvsp
                   p+++++++  + L++     g+l lGGl ++ +++ ++++ + ++ ++++
     af32513   339 PTHTSNrgvlSyLEPR----GSLLLGGLDAeasrhlqehrlgltpEATNA 384  

                   gFrGCirnlrvngk<-*
                   ++ GC+++l+vng+   
     af32513   385 SLLGCMEDLSVNGQ    398  

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