hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18374001/chunk_1/iprscan-20080806-18374001.nocrc
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Query sequence: ag00032
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00006.15.fs ATP synthase alpha/beta family, nucleot   140.8    5.9e-42   1
PF02874.13.fs ATP synthase alpha/beta family, beta-ba    54.8    8.7e-17   1
PF02874.13.ls ATP synthase alpha/beta family, beta-ba    56.8    6.7e-14   1
PF00006.15.ls ATP synthase alpha/beta family, nucleot    36.2    2.9e-10   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02874.13.fs   1/1      51   117 ..     1    69 []    54.8  8.7e-17
PF02874.13.ls   1/1      51   117 ..     1    69 []    56.8  6.7e-14
PF00006.15.fs   1/1     173   312 ..     1   119 [.   140.8  5.9e-42
PF00006.15.ls   1/1     173   319 .]     1   206 []    36.2  2.9e-10

Alignments of top-scoring domains:
PF02874.13.fs: domain 1 of 1, from 51 to 117: score 54.8, E = 8.7e-17
                   *->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
                      ++ v+Gp+v+ + ++   p+  ++++ +l + g+++ g+vl++++ k
     ag00032    51    VSGVNGPLVILDHVKF--PRYAEIVHLTLPD-GTKRSGQVLEVSGSK 94   

                   VrivvmgsTdGlkr.GdeVkdTG<-*
                   ++++v+++T+G++ + +++++TG   
     ag00032    95 AVVQVFEGTSGIDAkKTSCEFTG    117  

PF02874.13.ls: domain 1 of 1, from 51 to 117: score 56.8, E = 6.7e-14
                   *->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
                      ++ v+Gp+v+ + ++   p+  ++++ +l + g+++ g+vl++++ k
     ag00032    51    VSGVNGPLVILDHVKF--PRYAEIVHLTLPD-GTKRSGQVLEVSGSK 94   

                   VrivvmgsTdGlkr.GdeVkdTG<-*
                   ++++v+++T+G++ + +++++TG   
     ag00032    95 AVVQVFEGTSGIDAkKTSCEFTG    117  

PF00006.15.fs: domain 1 of 1, from 173 to 312: score 140.8, E = 5.9e-42
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx   
                   *->TGiraIDgllPigrGQRigIfggsGvGKTvIlldmIanqa.kad...
                      TGi+aIDg++ i+rGQ+i+If+++G++++  ++++I++qa+ + +++
     ag00032   173    TGISAIDGMNSIARGQKIPIFSAAGLPHNE-IAAQICRQAgLVKksk 218  

                RF        xxxxxxxxxxxxxxxxxxxxx          xxxxxxxxxxxx
                   .......eevvvVyvlIGeRgrEVtefv..........rtvvVaatadep
                   +  + ++e++++V++++G   +++++f ++ +++++ ++++++++ a++p
     ag00032   219 dvvdyseENFAIVFAAMGVNMETARFFKsdfeengsmdNVCLFLNLANDP 268  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx   
                   aaeRylapytattiAEyFRd.qGkdVLlllDSlTRfArAlREis<-*
                     eR+++p++a+t AE+++++  k+VL++l++++ +A+AlRE+s   
     ag00032   269 TIERIITPRLALTTAEFLAYqCEKHVLVILTDMSSYAEALREVS    312  

PF00006.15.ls: domain 1 of 1, from 173 to 319: score 36.2, E = 2.9e-10
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx   
                   *->TGiraIDgllPigrGQRigIfggsGvGKTvIlldmIanqa.kad...
                      TGi+aIDg++ i+rGQ+i+If+++G++++  ++++I++qa+ + +++
     ag00032   173    TGISAIDGMNSIARGQKIPIFSAAGLPHNE-IAAQICRQAgLVKksk 218  

                RF        xxxxxxxxxxxxxxxxxxxxx          xxxxxxxxxxxx
                   .......eevvvVyvlIGeRgrEVtefv..........rtvvVaatadep
                   +  + ++e++++V++++G   +++++f ++ +++++ ++++++++ a++p
     ag00032   219 dvvdyseENFAIVFAAMGVNMETARFFKsdfeengsmdNVCLFLNLANDP 268  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   aaeRylapytattiAEyFRd.qGkdVLlllDSlTRfArAlREislalgep
                     eR+++p++a+t AE+++++  k+VL++l++++ +A+AlRE+s      
     ag00032   269 TIERIITPRLALTTAEFLAYqCEKHVLVILTDMSSYAEALREVS------ 312  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   PgreGYPgsvfyllsrLlERAgkveggGSITalptVlvegdDisdPipdn
                                       +  +                          
     ag00032   313 --------------------CSCF-------------------------- 316  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   vrsItDGqIvLsrkLaergiyPAIDvllSvS<-*
                                               S+S   
     ag00032   317 ----------------------------SLS    319  

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