hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-18434593/chunk_1/iprscan-20080806-18434593.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ag00037 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01735.9.ls Lysophospholipase catalytic domain 597.5 1.2e-176 1 PF01735.9.fs Lysophospholipase catalytic domain 595.6 4.1e-176 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01735.9.fs 1/1 102 531 .. 1 517 [] 595.6 4.1e-176 PF01735.9.ls 1/1 102 531 .. 1 517 [] 597.5 1.2e-176 Alignments of top-scoring domains: PF01735.9.fs: domain 1 of 1, from 102 to 531: score 595.6, E = 4.1e-176 *->IgIAvSGGGyRAMlsGAGalaAlDsRtdNatehgLgGLLQSstYiaG ++I+++GGG+RAM+s++G+la+l+ + GLL++++Yi+G ag00037 102 VAIMATGGGIRAMTSLYGQLAGLK----------ELGLLDCVSYITG 138 LSGGsWLvGsLAvNNftsvqdlsdkmteedsiWdlnhsifnGPkgginiv +SG++W++++L ++++++s+k+++ +++++l++++++ +k+g++++ ag00037 139 ASGSTWALANL-----YEDPEWSQKDLA-GPTELLKTQVTK-NKLGVLAP 181 knikrYddivdeVaeKkdAGFnvSLTDiWGRALsynLlpsldrGGpnytw ++++rY ++e+ae+++ G+++++T++W+ +++++Ll+ ++++++++ ag00037 182 SQLQRY---RQELAERARLGYPSCFTNLWA-LINEALLH---DEPHDHKL 224 SSirdtewFqngemPfPIivAd.grypgttvinlNatvfEFsPyEfGSWD S++r e++++g++P+PI++A+++++++ t++++ ++++EFsPyE+G + ag00037 225 SDQR--EALSHGQNPLPIYCALnTKGQSLTTFEF-GEWCEFSPYEVG--F 269 ptlnsFipteYlGTkfsNGtpvkkgkCvrgfDnaGFvmGTSStLFNqfLl p++++Fip+e++G++f++G+++k+ +++r+++++G++++ L+ ag00037 270 PKYGAFIPSELFGSEFFMGQLMKRLPESRICFLEGIWSN---------LY 310 ainstsksStmlpsflkdlidhflkndlsedqnDiaqypPNPFqdaeein a+n+++ S++++s++++++d++++n++++d++++++++ +ee++ ag00037 311 AANLQD--SLYWASEPSQFWDRWVRNQANLDKEQVPLLK------IEEPP 352 snatnSWVQRmlesiaesdtLdLvDGGeDgkvqNiPLwPLLqkeRdvDVI s+a++ iae++t+ L++++++++++N++++++++k+++++++ ag00037 353 STAGR---------IAEFFTDLLTWRPLAQATHNFLRGLHFHKDYFQHPH 393 FAvDnsaDtdnfWPdGsSLvaTYERqfsprAssqgngkaFPyVPdqnTFv F++++++++d+ +P+ q++p s+++++++++++ +nT++ ag00037 394 FSTWKATTLDG-LPN----------QLTP---SEPHLCLLDVGYLINTSC 429 nPLGLntrPTFFGCDarNlTdlnhtvdnytPPLvvYlPNapwtynsNiST +PL ++P ++++D+++++d+ n +++++++++ ++++++++i++ ag00037 430 LPL---LQP-TRDVDLILSLDY-----NLHGAFQQLQLLGRFCQEQGIPF 470 fklsysdserqgmieNyGFeaaTqdNgtdddefahCvaCAiirRslerln +++s+s++e+++++e+++F+++T+++ +++++h++++++++R++++++ ag00037 471 PPISPSPEEQLQPRECHTFSDPTCPG---APAVLHFPLVSDSFREYSAPG 517 itlpseCsqCFenYCWnGTvd<-* +++++e+++ +G+v+ ag00037 518 VRRTPEEAA-------AGEVN 531 PF01735.9.ls: domain 1 of 1, from 102 to 531: score 597.5, E = 1.2e-176 *->IgIAvSGGGyRAMlsGAGalaAlDsRtdNatehgLgGLLQSstYiaG ++I+++GGG+RAM+s++G+la+l+ + GLL++++Yi+G ag00037 102 VAIMATGGGIRAMTSLYGQLAGLK----------ELGLLDCVSYITG 138 LSGGsWLvGsLAvNNftsvqdlsdkmteedsiWdlnhsifnGPkgginiv +SG++W++++L ++++++s+k+++ +++++l++++++ +k+g++++ ag00037 139 ASGSTWALANL-----YEDPEWSQKDLA-GPTELLKTQVTK-NKLGVLAP 181 knikrYddivdeVaeKkdAGFnvSLTDiWGRALsynLlpsldrGGpnytw ++++rY ++e+ae+++ G+++++T++W+ +++++Ll+ ++++++++ ag00037 182 SQLQRY---RQELAERARLGYPSCFTNLWA-LINEALLH---DEPHDHKL 224 SSirdtewFqngemPfPIivAd.grypgttvinlNatvfEFsPyEfGSWD S++r e++++g++P+PI++A+++++++ t++++ ++++EFsPyE+G + ag00037 225 SDQR--EALSHGQNPLPIYCALnTKGQSLTTFEF-GEWCEFSPYEVG--F 269 ptlnsFipteYlGTkfsNGtpvkkgkCvrgfDnaGFvmGTSStLFNqfLl p++++Fip+e++G++f++G+++k+ +++r+++++G++++ L+ ag00037 270 PKYGAFIPSELFGSEFFMGQLMKRLPESRICFLEGIWSN---------LY 310 ainstsksStmlpsflkdlidhflkndlsedqnDiaqypPNPFqdaeein a+n+++ S++++s++++++d++++n++++d++++++++ +ee++ ag00037 311 AANLQD--SLYWASEPSQFWDRWVRNQANLDKEQVPLLK------IEEPP 352 snatnSWVQRmlesiaesdtLdLvDGGeDgkvqNiPLwPLLqkeRdvDVI s+a++ iae++t+ L++++++++++N++++++++k+++++++ ag00037 353 STAGR---------IAEFFTDLLTWRPLAQATHNFLRGLHFHKDYFQHPH 393 FAvDnsaDtdnfWPdGsSLvaTYERqfsprAssqgngkaFPyVPdqnTFv F++++++++d+ +P+ q++p s+++++++++++ +nT++ ag00037 394 FSTWKATTLDG-LPN----------QLTP---SEPHLCLLDVGYLINTSC 429 nPLGLntrPTFFGCDarNlTdlnhtvdnytPPLvvYlPNapwtynsNiST +PL ++P ++++D+++++d+ n +++++++++ ++++++++i++ ag00037 430 LPL---LQP-TRDVDLILSLDY-----NLHGAFQQLQLLGRFCQEQGIPF 470 fklsysdserqgmieNyGFeaaTqdNgtdddefahCvaCAiirRslerln +++s+s++e+++++e+++F+++T+++ +++++h++++++++R++++++ ag00037 471 PPISPSPEEQLQPRECHTFSDPTCPG---APAVLHFPLVSDSFREYSAPG 517 itlpseCsqCFenYCWnGTvd<-* +++++e+++ +G+v+ ag00037 518 VRRTPEEAA-------AGEVN 531 //