hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-10512565/chunk_1/iprscan-20090416-10512565.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ag00172s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 282.2    3.9e-80   1
SM00219                                                  12.2    6.8e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      68   360 ..     1   280 []    12.2  6.8e-12
SM00220    1/1      68   361 ..     1   231 []   282.2  3.9e-80

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 68 to 360: score 12.2, E = 6.8e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       +++ +LG G+ G+V+k   k++++  A K ++ + ++  +  ++rE
   ag00172s1    68    FEKISELGAGNGGVVFKVSHKpsgLVMARKLIHLEIkpaiRNQIIRE 114  

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                   ++++++   + p iV ++G+  ++       + + i mE+m+gG+L++ L
   ag00172s1   115 LQVLHEC--NSPYIVGFYGAFYSD-------GEISICMEHMDGGSLDQVL 155  

                   rknrpklslsdLlsfAlQIAkGMeYLesk.nfvHRDLAARNcLvgenkvv
                   +k ++ ++ + L + ++ + kG  YL +k+++ HRD    N+Lv++++ +
   ag00172s1   156 KKAGR-IPEQILGKVSIAVIKGLTYLREKhKIMHRDVKPSNILVNSRGEI 204  

                   KIsDFGLs.RdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg
                   K +DFG s+  +++           +     g+++      m+PE l+  
   ag00172s1   205 KLCDFGVSgQLIDSM------ANSFV-----GTRS-----YMSPERLQGT 238  

                   kFtskSDVWSFGVlLWEif..tlGeqPYpgeiqqfmsneevleylkkGyR
                    ++ +SD+WS G  L E+  + +  +P+       ++ e ++ +  +G+ 
   ag00172s1   239 HYSVQSDIWSMGLSLVEMAvgRYPIPPPDA-----KELELMFGCQVEGDA 283  

                   lpkPendlpiS....................................svt
                    + P+      ++++++ ++ + +++++    +  +   ++++++ +s  
   ag00172s1   284 AETPPR----PrtpgrplssygmdsrppmaifelldyivnepppklpSGV 329  

                   CPdelYdlMlqCWaedPedRPtFsel.verl<-*
                    + e  d   +C   +P++R   ++l v+ +   
   ag00172s1   330 FSLEFQDFVNKCLIKNPAERADLKQLmVHAF    360  

SM00220: domain 1 of 1, from 68 to 361: score 282.2, E = 3.9e-80
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      +e++ +lG G  G+V+++ +k +g ++A K i+ + ++  +++i+rE
   ag00172s1    68    FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHleikpairNQIIRE 114  

                   ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg
                   +++L++ + P+IV +y++f++++++ ++mE+++G  G+L ++lkk gr  
   ag00172s1   115 LQVLHEcNSPYIVGFYGAFYSdGEISICMEHMDG--GSLDQVLKKAGR-- 160  

                   lrkvlsE.earfyfrQilsaLeYLHsq.gIiHRDLKPeNiLLds..hvKl
                       ++E+   ++   ++++L YL ++++I+HRD+KP+NiL++s++++Kl
   ag00172s1   161 ----IPEqILGKVSIAVIKGLTYLREKhKIMHRDVKPSNILVNSrgEIKL 206  

                   aDFGlArql.....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   +DFG++ ql ++  ++fvGT+ Ym+PE l++++Y+   +DiWS G  l E
   ag00172s1   207 CDFGVSGQLidsmaNSFVGTRSYMSPERLqgtHYSV-QSDIWSMGLSLVE 255  

                   lltGkpPFp.....qldlifkkig..........................
                   +++G+ P p+++ ++l+l+f   ++++  ++++++++++++ ++++ +++
   ag00172s1   256 MAVGRYPIPppdakELELMFGCQVegdaaetpprprtpgrplssygmdsr 305  

                   .........................SpeakdLikklLvkdPekRlta.ea
                   ++    +  ++  ++++++ +++  S e+ d+++k+L k+P++R   +++
   ag00172s1   306 ppmaifelldyivnepppklpsgvfSLEFQDFVNKCLIKNPAERADLkQL 355  

                   LedeldikaHPff<-*
                   +        H f+   
   ag00172s1   356 MV-------HAFI    361  

//