hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-18500781/chunk_1/iprscan-20080806-18500781.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00154 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07719.7.fs Tetratricopeptide repeat 50.1 5.4e-13 8 PF00400.22.fs WD domain, G-beta repeat 37.5 1.4e-09 4 PF00400.22.ls WD domain, G-beta repeat 39.4 1.1e-08 6 PF07719.7.ls Tetratricopeptide repeat 36.9 6.3e-08 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/4 44 81 .. 1 38 [] 13.6 0.0075 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 4, from 44 to 81: score 13.6, E = 0.0075 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++ +g + Vtc+a+s++ +a + D+ + ++d ah00154 44 RTLLsPQdGA-AKVTCMAWSQN-NAKFAVCTVDRVVLLYD 81 //