hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-18500781/chunk_1/iprscan-20080806-18500781.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00154 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 68.5 8.4e-16 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/7 39 81 .. 1 46 [] 24.6 0.014 SM00320 2/7 92 131 .. 1 46 [] 13.3 3.9 SM00320 3/7 139 176 .. 1 46 [] 2.6 1.9e+02 SM00320 4/7 178 217 .. 1 46 [] 12.2 5.8 SM00320 5/7 223 260 .. 1 46 [] 6.6 44 SM00320 6/7 262 304 .. 1 46 [] 1.0 3.4e+02 SM00320 7/7 316 351 .. 1 46 [] 8.2 24 Alignments of top-scoring domains: SM00320: domain 1 of 7, from 39 to 81: score 24.6, E = 0.014 *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl k lrtl ++ + Vt++a+s+++ +a++ D+ + l ah00154 39 HlKHLRTLLSPQDGaAKVTCMAWSQNN------AKFAVCTvDRVVLL 79 Wd<-* +d ah00154 80 YD 81 SM00320: domain 2 of 7, from 92 to 131: score 13.3, E = 3.9 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+ +++ + V ++afspd+ + +a g +D+ i+++ ah00154 92 TkPADMKYGRKSY--MVKGMAFSPDS------TKIAIGQtDNIIYVY 130 d<-* + ah00154 131 K 131 SM00320: domain 3 of 7, from 139 to 176: score 2.6, E = 1.9e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ + ++ t+ +Vt++++ +++ g g++rl ah00154 139 KkVICNKFI-QTS--AVTCLQWPAE-------YIIVFGLaEGKVRLA 175 d<-* + ah00154 176 N 176 SM00320: domain 4 of 7, from 178 to 217: score 12.2, E = 5.8 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ +t+ g ++ +V s++ + +g + ++sg Dgti + ah00154 178 KtNKSSTIYGTES--YVVSLTTNCSG------KGILSGHaDGTIVRY 216 d<-* ah00154 217 F 217 SM00320: domain 5 of 7, from 223 to 260: score 6.6, E = 44 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd +++ +l H p +++a+ + +++a+g+D++i + ah00154 223 SgESQGKLVNHPC--PPYALAWATN-------SIVAAGCDRKIVAYG 260 <-* ah00154 - - SM00320: domain 6 of 7, from 262 to 304: score 1.0, E = 3.4e+02 *->t.kllrtlk....gHtgespVtsvafspdggssdspnllasgs.Dgt ++ l+t++ +++ + + t+ sp g + ++ gs D+ ah00154 262 EgHMLQTFDysrdPQER--EFTTAVSSPGG------QSVVLGSyDR- 299 irlWd<-* +r+++ ah00154 300 LRVFN 304 SM00320: domain 7 of 7, from 316 to 351: score 8.2, E = 24 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++k + l +t++a+ dg ++l++g g + + ah00154 316 KpKEITNLY------TITALAWKRDG------SRLCVGTlCGGVEQF 350 d<-* d ah00154 351 D 351 //