hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18564767/chunk_1/iprscan-20080806-18564767.nocrc
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Query sequence: ah00223
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          43.2    8.3e-10   2
PF00096.16.fs Zinc finger, C2H2 type                          39.2    1.3e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/2       6    29 ..     1    24 []    23.2  0.00089
PF00096.16.ls   2/2      35    58 ..     1    24 []    20.0   0.0078

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 2, from 6 to 29: score 23.2, E = 0.00089
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ +C+k++ + + L++H + +H   
     ah00223     6    WTCS-VCDKKYVTEYMLQKHVQLtH    29   

PF00096.16.ls: domain 2 of 2, from 35 to 58: score 20.0, E = 0.0078
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+  Cg++ s+++++ rH+r++H   
     ah00223    35    QSCQ-LCGTKVSTRASMSRHMRRkH    58   

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