hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-18564767/chunk_1/iprscan-20080806-18564767.nocrc
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Query sequence: ah00223
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  48.4    9.1e-10   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2       6    29 ..     1    23 []    25.9   0.0055
SM00355      2/2      35    58 ..     1    23 []    22.5    0.058

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 6 to 29: score 25.9, E = 0.0055
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+k++ ++  L++H++ +H   
     ah00223     6    WTCSV-CDKKYVTEyMLQKHVQlTH    29   

SM00355: domain 2 of 2, from 35 to 58: score 22.5, E = 0.058
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        C++ Cg + s++ ++ rHmr++H   
     ah00223    35    QSCQL-CGTKVSTRaSMSRHMRrKH    58   

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