hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19024038/chunk_1/iprscan-20080806-19024038.nocrc
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Query sequence: ah00257
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00310                                                 214.0    1.4e-59   1
SM00233                                                  61.6    9.9e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      87   191 ..     1    82 []    61.6  9.9e-14
SM00310     1/1     234   336 ..     1   109 []   214.0  1.4e-59

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 87 to 191: score 61.6, E = 9.9e-14
                   *->vikeGwLlkkskswkkryfvLfn.......gvLlyyksk........
                      v k G+L+k + s +kr+fvL+  ++ +++ +L yy+++++ +++++
     ah00257    87    VRKVGYLRKPK-SMHKRFFVLRAaseaggpARLEYYENEkkwrhkss 132  

                   kpkgsipLsgc.svre.p......cFeivt.drtlllqAeseeereeWve
                   +pk sipL++c  +++++++++++   ++t+d+ + ++A+se e+++W +
     ah00257   133 APKRSIPLESCfNINKrAdsknkhLVALYTrDEHFAIAADSEAEQDSWYQ 182  

                   alqsaiaka<-*
                   al ++ ++a   
     ah00257   183 ALLQLHNRA    191  

SM00310: domain 1 of 1, from 234 to 336: score 214.0, E = 1.4e-59
                   *->gkqvwvvivkteglercknLlsGsyrLrlTseeltLlrkpdslnsrv
                      +k+vw+vi+k++gl+++kn l+G+yrL+lTs+++++++    lns++
     ah00257   234    FKEVWQVILKPKGLGQTKN-LIGIYRLCLTSKTISFVK----LNSEA 275  

                   elvvWPLlslRRyGrtdanfFfFEaGRrCvsGpGeFtFQvdDtvvAqeIf
                   ++vv++L+++RR+G+ ++nfFf+E+GR++v+GpGeF++QvdD+vvAq+++
     ah00257   276 AAVVLQLMNIRRCGH-SENFFFIEVGRSAVTGPGEFWMQVDDSVVAQNMH 324  

                   qlvleamqalan<-*
                   +++leam+a+++   
     ah00257   325 ETILEAMRAMSD    336  

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