hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-19153462/chunk_1/iprscan-20080806-19153462.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00377 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07678.4.ls A-macroglobulin complement component 333.7 2.9e-97 1 PF07678.4.fs A-macroglobulin complement component 331.7 1.1e-96 1 PF07677.4.fs A-macroglobulin receptor 164.4 2e-51 1 PF07677.4.ls A-macroglobulin receptor 166.2 7.5e-47 1 PF07703.4.ls Alpha-2-macroglobulin family N-terminal reg 162.6 9.6e-46 1 PF07703.4.fs Alpha-2-macroglobulin family N-terminal reg 160.7 1.2e-45 1 PF01759.11.ls UNC-6/NTR/C345C module 160.7 3.6e-45 1 PF01759.11.fs UNC-6/NTR/C345C module 158.8 1.3e-44 1 PF00207.12.fs Alpha-2-macroglobulin family 148.8 2.6e-42 1 PF00207.12.ls Alpha-2-macroglobulin family 150.7 3.6e-42 1 PF01835.9.fs Alpha-2-macroglobulin family N-terminal reg 149.4 8.6e-42 1 PF01835.9.ls Alpha-2-macroglobulin family N-terminal reg 142.9 8.2e-40 1 PF01821.8.fs Anaphylotoxin-like domain 64.3 4.6e-25 1 PF01821.8.ls Anaphylotoxin-like domain 66.2 9.8e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01835.9.ls 1/1 13 313 .. 1 307 [] 142.9 8.2e-40 PF01835.9.fs 1/1 140 313 .. 125 307 .] 149.4 8.6e-42 PF07703.4.ls 1/1 476 621 .. 1 161 [] 162.6 9.6e-46 PF07703.4.fs 1/1 476 621 .. 1 161 [] 160.7 1.2e-45 PF01821.8.ls 1/1 709 743 .. 1 37 [] 66.2 9.8e-17 PF01821.8.fs 1/1 709 743 .. 1 37 [] 64.3 4.6e-25 PF00207.12.fs 1/1 788 880 .. 1 106 [] 148.8 2.6e-42 PF00207.12.ls 1/1 788 880 .. 1 106 [] 150.7 3.6e-42 PF07678.4.fs 1/1 1058 1324 .. 1 277 [] 331.7 1.1e-96 PF07678.4.ls 1/1 1058 1324 .. 1 277 [] 333.7 2.9e-97 PF07677.4.ls 1/1 1488 1577 .. 1 97 [] 166.2 7.5e-47 PF07677.4.fs 1/1 1488 1577 .. 1 97 [] 164.4 2e-51 PF01759.11.ls 1/1 1622 1732 .. 1 130 [] 160.7 3.6e-45 PF01759.11.fs 1/1 1622 1732 .. 1 130 [] 158.8 1.3e-44 Alignments of top-scoring domains: PF01835.9.ls: domain 1 of 1, from 13 to 313: score 142.9, E = 8.2e-40 *->lllvsliglstqsgdpkylVfvpsllrggpvenvkvelhdrkgevla l+ ++ ++ ++p++l+f ps+ + g++ v v+l+ ++ ah00377 13 GLIWASSFFTLSLQKPRLLLFSPSVVHLGVPLSVGVQLQ------DV 53 tgttdvqghv.elspgkkklfllalcsgfttlrslsssal.dlsvkipgs ++v+g+v + p ++++ +cs ++ + s ls+++p + ah00377 54 PRGQVVKGSVfLRNPSRNNV----PCSPKVDFTLSSERDFaLLSLQVPLK 99 rffsIswrfkD.qr.qy.....Vavqa.fpqv..........eekvvlvs + k + +q+ ++++V ++a+ p+ +++ +++++ ++ l+s ah00377 100 DA-------KScGLhQLlrgpeVQLVAhSPWLkdslsrttniQGINLLFS 142 gqsgkvFiqTDkpiYrPGetVhfrvvRfsrdqdgknlrPlkedipPvtve ++g +F+qTD piY+PG++V++rv f++dq +rP+ ++i+ v ah00377 143 SRRGHLFLQTDQPIYNPGQRVRYRV--FALDQ---KMRPSTDTIT---VM 184 iedPdGnrvksdqwvslkldwenGlfslsfpLpeeaptGlWkivakyggg +e+ +G rv ++ ++ + +f+ +f +p+ + +G+Wki+a++ +g ah00377 185 VENSHGLRV---RKKEVYM--PSSIFQDDFVIPDISEPGTWKISARFSDG 229 pkqshs..FeVeEyVlPrFeVelklppkkf.lilde...eltiticarYl ++++s++FeV++yVlP+FeV+++ p k++ l + + +e+ ++i+arY ah00377 230 LESNSStqFEVKKYVLPNFEVKIT-PGKPYiLTVPGhldEMQLDIQARYI 278 yGkPVaggkvtvslgvqpldtakkalpgylfgvpde<-* yGkPV g ++v++g+ ++d++k+ + g ++++ ah00377 279 YGKPV-QGVAYVRFGLLDEDGKKTFFRGLESQTKLV 313 PF01835.9.fs: domain 1 of 1, from 140 to 313: score 149.4, E = 8.6e-42 *->lvsgqsgkvFiqTDkpiYrPGetVhfrvvRfsrdqdgknlrPlkedi l+s ++g +F+qTD piY+PG++V++rv f++dq +rP+ ++i ah00377 140 LFSSRRGHLFLQTDQPIYNPGQRVRYRV--FALDQ---KMRPSTDTI 181 pPvtveiedPdGnrvksdqwvslkldwenGlfslsfpLpeeaptGlWkiv + v +e+ +G rv ++ ++ + +f+ +f +p+ + +G+Wki+ ah00377 182 T---VMVENSHGLRV---RKKEVYM--PSSIFQDDFVIPDISEPGTWKIS 223 akygggpkqshs..FeVeEyVlPrFeVelklppkkf.lilde...eltit a++ +g ++++s++FeV++yVlP+FeV+++ p k++ l + + +e+ ++ ah00377 224 ARFSDGLESNSStqFEVKKYVLPNFEVKIT-PGKPYiLTVPGhldEMQLD 272 icarYlyGkPVaggkvtvslgvqpldtakkalpgylfgvpde<-* i+arY yGkPV g ++v++g+ ++d++k+ + g ++++ ah00377 273 IQARYIYGKPV-QGVAYVRFGLLDEDGKKTFFRGLESQTKLV 313 PF07703.4.ls: domain 1 of 1, from 476 to 621: score 162.6, E = 9.6e-46 *->sksyLhl.sldnkkelkvGetlkvtinaplpgkelkitdfyYlvlsr ++ +L ++++d +++++vG+tl+++++a g+ + ++yY++lsr ah00377 476 GPGFLSIeRPD-SRPPRVGDTLNLNLRAVGSGA--TFSHYYYMILSR 519 GkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdapdg G+Iv + r++++ ++t++s+ v++ +aPs+++va+y++ + ah00377 520 GQIVFMNREPKR-------TLTSVSVFVDHHLAPSFYFVAFYYH----GD 558 tpevvaDSvwvdVed.ccknkvslsf.speqykPgelkvtLrvssgdpgs + va+S+ vdV+ + c++k++ls+++ +qy+ ge v+L++ ++d+ + ah00377 559 --HPVANSLRVDVQAgACEGKLELSVdGAKQYRNGE-SVKLHL-ETDSLA 604 lVgLsAVDkaVylLksg<-* lV+L+A D a y+ s+ ah00377 605 LVALGALDTALYAAGSK 621 PF07703.4.fs: domain 1 of 1, from 476 to 621: score 160.7, E = 1.2e-45 *->sksyLhl.sldnkkelkvGetlkvtinaplpgkelkitdfyYlvlsr ++ +L ++++d +++++vG+tl+++++a g+ + ++yY++lsr ah00377 476 GPGFLSIeRPD-SRPPRVGDTLNLNLRAVGSGA--TFSHYYYMILSR 519 GkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdapdg G+Iv + r++++ ++t++s+ v++ +aPs+++va+y++ + ah00377 520 GQIVFMNREPKR-------TLTSVSVFVDHHLAPSFYFVAFYYH----GD 558 tpevvaDSvwvdVed.ccknkvslsf.speqykPgelkvtLrvssgdpgs + va+S+ vdV+ + c++k++ls+++ +qy+ ge v+L++ ++d+ + ah00377 559 --HPVANSLRVDVQAgACEGKLELSVdGAKQYRNGE-SVKLHL-ETDSLA 604 lVgLsAVDkaVylLksg<-* lV+L+A D a y+ s+ ah00377 605 LVALGALDTALYAAGSK 621 PF01821.8.ls: domain 1 of 1, from 709 to 743: score 66.2, E = 9.8e-17 *->CCeDGmrenPlmgqsCeeRaaritdGkeCrkAFleCC<-* CC+DG+++ P m++sCe+Raar+++ ++Cr++Fl+CC ah00377 709 CCQDGVTRLP-MMRSCEQRAARVQQ-PDCREPFLSCC 743 PF01821.8.fs: domain 1 of 1, from 709 to 743: score 64.3, E = 4.6e-25 *->CCeDGmrenPlmgqsCeeRaaritdGkeCrkAFleCC<-* CC+DG+++ P m++sCe+Raar+++ ++Cr++Fl+CC ah00377 709 CCQDGVTRLP-MMRSCEQRAARVQQ-PDCREPFLSCC 743 PF00207.12.fs: domain 1 of 1, from 788 to 880: score 148.8, E = 2.6e-42 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk WLW++++++ r + +l+++lPDS+TtWei++ slS+tk ah00377 788 NWLWRVETVD---RFQ-------ILTLWLPDSLTTWEIHGLSLSKTK 824 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik Glcva p ++l+VF++F+++L+LP SV+R+Eq+e++++++NYl+k+ ++ ah00377 825 GLCVATP-VQLRVFREFHLHLRLPMSVRRFEQLELRPVLYNYLDKN--LT 871 Vrvtleese<-* V+v++ + e ah00377 872 VSVHVSPVE 880 PF00207.12.ls: domain 1 of 1, from 788 to 880: score 150.7, E = 3.6e-42 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk WLW++++++ r + +l+++lPDS+TtWei++ slS+tk ah00377 788 NWLWRVETVD---RFQ-------ILTLWLPDSLTTWEIHGLSLSKTK 824 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik Glcva p ++l+VF++F+++L+LP SV+R+Eq+e++++++NYl+k+ ++ ah00377 825 GLCVATP-VQLRVFREFHLHLRLPMSVRRFEQLELRPVLYNYLDKN--LT 871 Vrvtleese<-* V+v++ + e ah00377 872 VSVHVSPVE 880 PF07678.4.fs: domain 1 of 1, from 1058 to 1324: score 331.7, E = 1.1e-96 *->qGYqrqLtYrkpDGSYSAFgnrdkpgSTWLTAFVvKvFaqArkrqea +GY+r++++rk+DGSY+A++ r ++STWLTAFV+Kv+++A++ ah00377 1058 KGYMRIQQFRKADGSYAAWLSR--DSSTWLTAFVLKVLSLAQE---- 1098 gqeyItdIdenvIckavkWLilrQqkpdGsFrEsgpviHreMqGgvggvd + ++++++++ +WL+++Qq +dGsF++++pv++r MqGg+ g+d ah00377 1099 ---QV-GGSPEKLQETSNWLLSQQQ-ADGSFQDPCPVLDRSMQGGLVGND 1143 gdvsLTAFVlIALlEarkic.es.....vnslkesieKAldYL.esqles v+LTAFV+IAL + + + ++ ++ +++ si+KA ++L+e++++ ah00377 1144 ETVALTAFVTIALHHGLAVFqDEgaeplKQRVEASISKASSFLgEKASAG 1193 ltnppYalAVYTAItaYALaLagkpekakallkkkLdslasedgdsrhWq l +a A ItaYAL+L+++p ++++ L+++a+e+gd +W+ ah00377 1194 LLGA-HAAA----ITAYALTLTKAPVDLLGVAHNNLMAMAQETGDNLYWG 1238 esessqdppksr.lyyf.l.r.ypkataadVEtTAYALLalLtasaklka + +sq+ s++ +++++ ++p+a+a+++EtTAYALL lL l++ ah00377 1239 SVTGSQSNAVSPtPAPRnPsDpMPQAPALWIETTAYALLHLL-----LHE 1283 kdleeagpIvrWLikQrnygGGFsSTQDTvvALqALaeYaa<-* ++ e a++++ WL++Q ++ GGF+STQDTv+AL AL++Y++ ah00377 1284 GKAEMADQAAAWLTRQGSFQGGFRSTQDTVIALDALSAYWI 1324 PF07678.4.ls: domain 1 of 1, from 1058 to 1324: score 333.7, E = 2.9e-97 *->qGYqrqLtYrkpDGSYSAFgnrdkpgSTWLTAFVvKvFaqArkrqea +GY+r++++rk+DGSY+A++ r ++STWLTAFV+Kv+++A++ ah00377 1058 KGYMRIQQFRKADGSYAAWLSR--DSSTWLTAFVLKVLSLAQE---- 1098 gqeyItdIdenvIckavkWLilrQqkpdGsFrEsgpviHreMqGgvggvd + ++++++++ +WL+++Qq +dGsF++++pv++r MqGg+ g+d ah00377 1099 ---QV-GGSPEKLQETSNWLLSQQQ-ADGSFQDPCPVLDRSMQGGLVGND 1143 gdvsLTAFVlIALlEarkic.es.....vnslkesieKAldYL.esqles v+LTAFV+IAL + + + ++ ++ +++ si+KA ++L+e++++ ah00377 1144 ETVALTAFVTIALHHGLAVFqDEgaeplKQRVEASISKASSFLgEKASAG 1193 ltnppYalAVYTAItaYALaLagkpekakallkkkLdslasedgdsrhWq l +a A ItaYAL+L+++p ++++ L+++a+e+gd +W+ ah00377 1194 LLGA-HAAA----ITAYALTLTKAPVDLLGVAHNNLMAMAQETGDNLYWG 1238 esessqdppksr.lyyf.l.r.ypkataadVEtTAYALLalLtasaklka + +sq+ s++ +++++ ++p+a+a+++EtTAYALL lL l++ ah00377 1239 SVTGSQSNAVSPtPAPRnPsDpMPQAPALWIETTAYALLHLL-----LHE 1283 kdleeagpIvrWLikQrnygGGFsSTQDTvvALqALaeYaa<-* ++ e a++++ WL++Q ++ GGF+STQDTv+AL AL++Y++ ah00377 1284 GKAEMADQAAAWLTRQGSFQGGFRSTQDTVIALDALSAYWI 1324 PF07677.4.ls: domain 1 of 1, from 1488 to 1577: score 166.2, E = 7.5e-47 *->SnMaivdVkLlSGFspdkedLkkLslgvdvyliskyEidkalsedgk S+Mai+dV+LlSGF + + dL+kL++ +d+y +s++E++ + + ah00377 1488 SGMAIADVTLLSGFHALRADLEKLTSLSDRY-VSHFETE-----GPH 1528 VilYlDklsskeeeCfsFraeqtveVgnlqPAsVvVYDYYeperrctkfY V+lY+D+++ + eC+ F+a q+v+Vg++qPAs+++YDYY+perrc++fY ah00377 1529 VLLYFDSVPTSR-ECVGFEAVQEVPVGLVQPASATLYDYYNPERRCSVFY 1577 <-* ah00377 - - PF07677.4.fs: domain 1 of 1, from 1488 to 1577: score 164.4, E = 2e-51 *->SnMaivdVkLlSGFspdkedLkkLslgvdvyliskyEidkalsedgk S+Mai+dV+LlSGF + + dL+kL++ +d+y +s++E++ + + ah00377 1488 SGMAIADVTLLSGFHALRADLEKLTSLSDRY-VSHFETE-----GPH 1528 VilYlDklsskeeeCfsFraeqtveVgnlqPAsVvVYDYYeperrctkfY V+lY+D+++ + eC+ F+a q+v+Vg++qPAs+++YDYY+perrc++fY ah00377 1529 VLLYFDSVPTSR-ECVGFEAVQEVPVGLVQPASATLYDYYNPERRCSVFY 1577 <-* ah00377 - - PF01759.11.ls: domain 1 of 1, from 1622 to 1732: score 160.7, E = 3.6e-45 *->ekaCkyspgvDYvykvkVlevteergsfdkytvnvlleVlKsGslsD ++aC y+p+v+Y+++vkVl+ + + + f +++++ ++Vl+ + D ah00377 1622 KFAC-YYPRVEYGFQVKVLREDSR-AAFRLFETKI-TQVLHFTK--D 1663 egikrdgktrvlfisrskdlsCrcpLkLkkgksYLiMGkssdlwgeglkg + + + ++ r f++r+ sCr L+L++gk+YLiMG++++++++ g ah00377 1664 VKAAA-NQMR-NFLVRA---SCR--LRLEPGKEYLIMGLDGATYDL--EG 1704 rsqYvaLgknTwvEkWpdewgkrlecqqkrark<-* + qY+ L++n+w+E++p+e c+++r+r+ ah00377 1705 HPQYL-LDSNSWIEEMPSE----RLCRSTRQRA 1732 PF01759.11.fs: domain 1 of 1, from 1622 to 1732: score 158.8, E = 1.3e-44 *->ekaCkyspgvDYvykvkVlevteergsfdkytvnvlleVlKsGslsD ++aC y+p+v+Y+++vkVl+ + + + f +++++ ++Vl+ + D ah00377 1622 KFAC-YYPRVEYGFQVKVLREDSR-AAFRLFETKI-TQVLHFTK--D 1663 egikrdgktrvlfisrskdlsCrcpLkLkkgksYLiMGkssdlwgeglkg + + + ++ r f++r+ sCr L+L++gk+YLiMG++++++++ g ah00377 1664 VKAAA-NQMR-NFLVRA---SCR--LRLEPGKEYLIMGLDGATYDL--EG 1704 rsqYvaLgknTwvEkWpdewgkrlecqqkrark<-* + qY+ L++n+w+E++p+e c+++r+r+ ah00377 1705 HPQYL-LDSNSWIEEMPSE----RLCRSTRQRA 1732 //