hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19153462/chunk_1/iprscan-20080806-19153462.nocrc
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Query sequence: ah00377
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00643                                                 150.3      2e-40   1
SM00104                                                  55.8    5.7e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00104    1/1     709   743 ..     1    37 []    55.8  5.7e-12
SM00643    1/1    1621  1733 ..     1   124 []   150.3    2e-40

Alignments of top-scoring domains:
SM00104: domain 1 of 1, from 709 to 743: score 55.8, E = 5.7e-12
                   *->CCedGmreapemgqtCeeraaritsgeeCrkaFlqCC<-*
                      CC+dG+ + p m ++Ce+raar+++++ Cr+ Fl+CC   
     ah00377   709    CCQDGVTRLP-MMRSCEQRAARVQQPD-CREPFLSCC    743  

SM00643: domain 1 of 1, from 1621 to 1733: score 150.3, E = 2e-40
                   *->lekaCksgrvDYvykvkVleveeegGedsfdiytvkileViKsGsPt
                      +++aC+++rv+Y ++vkVl+ + ++   +f+ +++ki++V++ +  +
     ah00377  1621    MKFACYYPRVEYGFQVKVLREDSRA---AFRLFETKITQVLHFT--K 1662 

                   DealrrggktrlflsrdsCckclkLkkgksYLiMGksgdlwr.dqdgerg
                   D+++  ++++r+fl r sC  +l+L++gk+YLiMG++g++++ +  g ++
     ah00377  1663 DVKAA-ANQMRNFLVRASC--RLRLEPGKEYLIMGLDGATYDlE--G-HP 1706 

                   qYyvLgknswveeWpteeecrlkrlqkr<-*
                   qY +L++nsw+ee+p+e+ cr++r +++   
     ah00377  1707 QY-LLDSNSWIEEMPSERLCRSTRQRAA    1733 

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