# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oah00519.fasta.nr -Q ah00519.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ah00519, 248 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6809234 sequences Expectation_n fit: rho(ln(x))= 6.7335+/-0.000217; mu= 3.4740+/- 0.012 mean_var=176.4268+/-33.593, 0's: 42 Z-trim: 64 B-trim: 0 in 0/65 Lambda= 0.096559 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087194|dbj|BAD92044.1| D site of albumin prom ( 248) 1744 254.0 1.4e-65 gi|114678274|ref|XP_512799.2| PREDICTED: similar t ( 238) 1659 242.2 5.1e-62 gi|1706312|sp|Q10586|DBP_HUMAN D site-binding prot ( 325) 1296 191.8 1e-46 gi|30584451|gb|AAP36478.1| Homo sapiens D site of ( 326) 1296 191.8 1e-46 gi|606799|gb|AAA81374.1| albumin D-box binding pro ( 325) 1293 191.3 1.4e-46 gi|90086131|dbj|BAE91618.1| unnamed protein produc ( 325) 1275 188.8 7.9e-46 gi|73947154|ref|XP_864877.1| PREDICTED: similar to ( 325) 1200 178.4 1.1e-42 gi|90108430|sp|Q32PF6|DBP_BOVIN D site-binding pro ( 325) 1192 177.3 2.4e-42 gi|47117805|sp|Q60925|DBP_MOUSE D site-binding pro ( 325) 1159 172.7 5.7e-41 gi|927241|gb|AAA73924.1| albumin gene D-Box bindin ( 325) 1154 172.0 9.3e-41 gi|118287|sp|P16443|DBP_RAT D site-binding protein ( 325) 1146 170.9 2e-40 gi|74148715|dbj|BAE24294.1| unnamed protein produc ( 325) 1141 170.2 3.3e-40 gi|194215729|ref|XP_001917599.1| PREDICTED: simila ( 323) 1112 166.1 5.4e-39 gi|73947157|ref|XP_864916.1| PREDICTED: similar to ( 225) 544 86.8 2.8e-15 gi|41207437|gb|AAR99621.1| D-binding protein 2 [Ra ( 225) 526 84.3 1.6e-14 gi|41207441|gb|AAR99623.1| D-binding protein 4 [Ra ( 98) 512 81.9 3.6e-14 gi|460705|dbj|BAA05833.1| tax-responsive element-b ( 193) 384 64.5 1.3e-08 gi|41207439|gb|AAR99622.1| D-binding protein 3 [Ra ( 188) 314 54.7 1.1e-05 gi|57037677|ref|XP_541515.1| PREDICTED: similar to ( 188) 312 54.4 1.3e-05 gi|158108967|gb|ABW11164.1| conserved hypothetical ( 550) 264 48.3 0.0028 gi|158278316|gb|EDP04081.1| WW domain protein [Chl ( 746) 262 48.1 0.0041 gi|114669435|ref|XP_001171681.1| PREDICTED: hepati ( 301) 252 46.3 0.0059 gi|97180301|sp|Q95JC9|PRP_PIG Basic proline-rich p ( 676) 256 47.3 0.0068 gi|15145797|gb|AAK61383.1| basic proline-rich prot ( 676) 256 47.3 0.0068 gi|109124559|ref|XP_001107336.1| PREDICTED: simila ( 670) 254 47.0 0.0082 >>gi|62087194|dbj|BAD92044.1| D site of albumin promoter (248 aa) initn: 1744 init1: 1744 opt: 1744 Z-score: 1332.4 bits: 254.0 E(): 1.4e-65 Smith-Waterman score: 1744; 100.000% identity (100.000% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 60 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP 70 80 90 100 110 120 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 130 140 150 160 170 180 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW 190 200 210 220 230 240 ah0051 EGARFGVS :::::::: gi|620 EGARFGVS >>gi|114678274|ref|XP_512799.2| PREDICTED: similar to D (238 aa) initn: 1659 init1: 1659 opt: 1659 Z-score: 1268.6 bits: 242.2 E(): 5.1e-62 Smith-Waterman score: 1659; 99.580% identity (99.580% similar) in 238 aa overlap (11-248:1-238) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|114 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDPAAASNSVSSCREVSW 180 190 200 210 220 230 ah0051 EGARFGVS :::::::: gi|114 EGARFGVS >>gi|1706312|sp|Q10586|DBP_HUMAN D site-binding protein (325 aa) initn: 1296 init1: 1296 opt: 1296 Z-score: 993.8 bits: 191.8 E(): 1e-46 Smith-Waterman score: 1296; 100.000% identity (100.000% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::::::::::::: gi|170 ARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|30584451|gb|AAP36478.1| Homo sapiens D site of albu (326 aa) initn: 1296 init1: 1296 opt: 1296 Z-score: 993.8 bits: 191.8 E(): 1e-46 Smith-Waterman score: 1296; 100.000% identity (100.000% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::::::::::::: gi|305 ARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|606799|gb|AAA81374.1| albumin D-box binding protein (325 aa) initn: 1293 init1: 1293 opt: 1293 Z-score: 991.5 bits: 191.3 E(): 1.4e-46 Smith-Waterman score: 1293; 99.457% identity (100.000% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW ::::::::.::::: gi|606 ARAALGTATGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|90086131|dbj|BAE91618.1| unnamed protein product [M (325 aa) initn: 1275 init1: 1275 opt: 1275 Z-score: 978.0 bits: 188.8 E(): 7.9e-46 Smith-Waterman score: 1275; 98.370% identity (99.457% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK ::::::::::::::::::.::::::::::::::::::::::::::::::: gi|900 MARPVSDRTPAPLLLGGPVGTPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|900 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVSAPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW ::::::.::::::: gi|900 ARAALGAASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|73947154|ref|XP_864877.1| PREDICTED: similar to D-s (325 aa) initn: 1200 init1: 1200 opt: 1200 Z-score: 921.5 bits: 178.4 E(): 1.1e-42 Smith-Waterman score: 1200; 91.848% identity (97.283% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK ::::::::.:: ::::::::.::::::::::::::::::::::::::::: gi|739 MARPVSDRAPASLLLGGPAGAPPGGGALLGLRSLLQGTSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP ::::::: :.::.:::::::::::::::::.::::::::::: :.:::::::::::::: gi|739 EKERKAAPPTATVPGPGLETAGPADAPAGAAVGGGSPRGRPGAPPGPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::: :::.::::::::::::::::::::::::: gi|739 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPAPSPVRTPAPSPGPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW .:::::.:.::::: gi|739 TRAALGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|90108430|sp|Q32PF6|DBP_BOVIN D site-binding protein (325 aa) initn: 1192 init1: 1192 opt: 1192 Z-score: 915.5 bits: 177.3 E(): 2.4e-42 Smith-Waterman score: 1192; 91.304% identity (97.283% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK ::::::.:::::::::::.:.:::::::::::::::::::::::.::::: gi|901 MARPVSERTPAPLLLGGPTGAPPGGGALLGLRSLLQGTSKPKEPTSCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP ::::::. ::::.::::::::::::: ::::::::::::::: .:.:::::::::::::: gi|901 EKERKASPPAATVPGPGLETAGPADASAGAVVGGGSPRGRPGAAPGPGLLAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP :::::::::::::::::::::::::::::: :::.::::::: ::::::::::::::::: gi|901 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPAPSPVRTPAPSPRPGSCGSASPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW ::::::.:.::::: gi|901 ARAALGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|47117805|sp|Q60925|DBP_MOUSE D site-binding protein (325 aa) initn: 1159 init1: 1159 opt: 1159 Z-score: 890.6 bits: 172.7 E(): 5.7e-41 Smith-Waterman score: 1159; 88.043% identity (96.739% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK ::::.:::::.:::::::::.::::::::::::::::.:::::::::::: gi|471 MARPLSDRTPGPLLLGGPAGAPPGGGALLGLRSLLQGNSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP ::::::.::.: .::::::::::::::.::: :::::::: ::: .:.:.:::::::::: gi|471 EKERKATLPSAPVPGPGLETAGPADAPSGAVSGGGSPRGRSGPVAGPSLFAPLLWERTLP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP ::::::::::::::::::::::::::: :: ::::::::::::::::.:.:::::::::: gi|471 FGDVEYVDLDAFLLEHGLPPSPPPPGGLSPAPSPARTPAPSPGPGSCSSSSPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::.::.:.::::: gi|471 ARATLGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 >>gi|927241|gb|AAA73924.1| albumin gene D-Box binding pr (325 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 886.9 bits: 172.0 E(): 9.3e-41 Smith-Waterman score: 1154; 87.500% identity (96.739% similar) in 184 aa overlap (11-194:1-184) 10 20 30 40 50 60 ah0051 TREPGGRCQAMARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLK ::::.:::::.:::::::::.::::::::::::::::.:::::::::::: gi|927 MARPLSDRTPGPLLLGGPAGAPPGGGALLGLRSLLQGNSKPKEPASCLLK 10 20 30 40 50 70 80 90 100 110 120 ah0051 EKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLP ::::::.::.: .::::::::::::::.::: :::::::: ::: .:.:.::::::::.: gi|927 EKERKATLPTAPVPGPGLETAGPADAPSGAVSGGGSPRGRSGPVAGPSLFAPLLWERTFP 60 70 80 90 100 110 130 140 150 160 170 180 ah0051 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP ::::::::::::::::::::::::::: :: ::::::::::::::::.:.:::::::::: gi|927 FGDVEYVDLDAFLLEHGLPPSPPPPGGLSPAPSPARTPAPSPGPGSCSSSSPRSSPGHAP 120 130 140 150 160 170 190 200 210 220 230 240 ah0051 ARAALGTASGHRAGAAKGAGRVLTGRGLDSGGGAVRRWGLGPWDLAAASNSVSSCREVSW :::.::.:.::::: gi|927 ARATLGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRF 180 190 200 210 220 230 248 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 6 19:19:17 2008 done: Wed Aug 6 19:22:07 2008 Total Scan time: 706.540 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]