hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19282810/chunk_1/iprscan-20080806-19282810.nocrc
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Query sequence: ah00631
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00993.11.ls Class II histocompatibility antigen, alp   153.8    4.2e-43   1
PF00993.11.fs Class II histocompatibility antigen, alp   151.8    1.7e-42   1
PF07654.6.fs Immunoglobulin C1-set domain                67.1    7.9e-20   1
PF07654.6.ls Immunoglobulin C1-set domain                46.4      9e-11   1
PF00047.15.fs Immunoglobulin domain                       22.9    1.6e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00993.11.fs   1/1      45   125 ..     1    84 []   151.8  1.7e-42
PF00993.11.ls   1/1      45   125 ..     1    84 []   153.8  4.2e-43
PF07654.6.fs   1/1     134   186 ..     1    56 [.    67.1  7.9e-20
PF07654.6.ls   1/1     134   205 ..     1    92 []    46.4    9e-11
PF00047.15.fs   1/1     141   188 ..     1    49 [.    22.9  1.6e-05

Alignments of top-scoring domains:
PF00993.11.fs: domain 1 of 1, from 45 to 125: score 151.8, E = 1.7e-42
                   *->dHvgiyGinfyQssgpsGeythefDGDElFYvDLekKetVwrLPeFa
                      +Hv i+ ++fy   + sGe++++fDGDE+F+vD+ kKetVwrL eF+
     ah00631    45    EHVIIQ-AEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFG 90   

                   dfasfdgfpQgalaniaicKhNLdvlikrsNsTPatn<-*
                   +fasf+  +Qgalania+ K+NL++++krsN TP tn   
     ah00631    91 RFASFE--AQGALANIAVDKANLEIMTKRSNYTPITN    125  

PF00993.11.ls: domain 1 of 1, from 45 to 125: score 153.8, E = 4.2e-43
                   *->dHvgiyGinfyQssgpsGeythefDGDElFYvDLekKetVwrLPeFa
                      +Hv i+ ++fy   + sGe++++fDGDE+F+vD+ kKetVwrL eF+
     ah00631    45    EHVIIQ-AEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFG 90   

                   dfasfdgfpQgalaniaicKhNLdvlikrsNsTPatn<-*
                   +fasf+  +Qgalania+ K+NL++++krsN TP tn   
     ah00631    91 RFASFE--AQGALANIAVDKANLEIMTKRSNYTPITN    125  

PF07654.6.fs: domain 1 of 1, from 134 to 186: score 67.1, E = 7.9e-20
                   *->ppgspepelgkpntLvClVtgFyPpdItVtWlkNGqevtegvestep
                      +  sp+ el++pn+L+C+++ F Pp+++VtWl+NG++vt+gv++t +
     ah00631   134    TN-SPV-ELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVF 178  

                   lpkngDgtY<-*
                   lp + D+ +   
     ah00631   179 LP-REDHLF    186  

PF07654.6.ls: domain 1 of 1, from 134 to 205: score 46.4, E = 9e-11
                   *->ppgspepelgkpntLvClVtgFyPpdItVtWlkNGqevtegvestep
                      +  sp+ el++pn+L+C+++ F Pp+++VtWl+NG++vt+gv++t +
     ah00631   134    TN-SPV-ELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVF 178  

                   lpkngDgtYqlsSyLtftasepesgdtYtCrVeHesLkvenePlt<-*
                   lp + D+ + + +   f  + p               +   +Pl+   
     ah00631   179 LP-REDHLFLTPHLIHFYLTSP--------------IP---SPLV    205  

PF00047.15.fs: domain 1 of 1, from 141 to 188: score 22.9, E = 1.6e-05
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                       e++ L C    f pp v+vtWlrngk++t+gv+ t++ ++ d+ + 
     ah00631   141    REPNVLICFIDKFTPPVVNVTWLRNGKpVTtGVSETVFLPREDHLF- 186  

                   tsLt<-*
                     Lt   
     ah00631   187 --LT    188  

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