hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19395668/chunk_1/iprscan-20080806-19395668.nocrc
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Query sequence: ah00678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 321.0    8.5e-92   1
SM00046                                                 207.7    1.1e-57   1
SM00248                                                  51.5    1.1e-10   2
SM00109                                                  37.4      2e-06   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00109      1/2      15    69 ..     1    61 []     8.7      0.5
SM00109      2/2      88   146 ..     1    61 []    28.7  0.00081
SM00046      1/1     213   337 ..     1   157 []   207.7  1.1e-57
SM00045      1/1     363   520 ..     1   195 []   321.0  8.5e-92
SM00248      1/2     764   794 ..     1    30 []    27.9   0.0014
SM00248      2/2     800   829 ..     1    30 []    23.6    0.028

Alignments of top-scoring domains:
SM00109: domain 1 of 2, from 15 to 69: score 8.7, E = 0.5
                   *->HkfvfrtfkptfCdv....CrksiwgsfkqaaksqglrCseCkvkcH
                      H + ++++++  C++++++C+ +   s+        ++C +Ck ++H
     ah00678    15    HLWLETNVSGDLCYLgeenCQVRFAKSAL------RRKCAVCKIVVH 55   

                   kkCaekvpaqshksglsC<-*
                     C e++ ++    +  C   
     ah00678    56 TACIEQLEKI----NFRC    69   

SM00109: domain 2 of 2, from 88 to 146: score 28.7, E = 0.00081
                   *->HkfvfrtfkptfCdvCrksiwgsfkqaak.sqglrCseCkvkcHkkC
                      H++v+r+++  +C +C+k   + f +++k++ + +Cs+Ck ++H+k 
     ah00678    88    HHWVHRRRQEGKCKQCGKGFQQKFSFHSKeIVAISCSWCKQAFHNKV 134  

                   aekvpaqshksglsC<-*
                    ++++   h  +++C   
     ah00678   135 TCFML---HHIEEPC    146  

SM00046: domain 1 of 1, from 213 to 337: score 207.7, E = 1.1e-57
                   *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp
                      plLVfvNPkSGg+qg        k+l+ f + LnprqVfdl++  gp
     ah00678   213    PLLVFVNPKSGGNQGT-------KVLQMFMWYLNPRQVFDLSQ-EGP 251  

                   dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq
                   + +lel  r+vp++          r+l+cGGDGTvgw+l+ ld++ l +q
     ah00678   252 KDALEL-YRKVPNL----------RILACGGDGTVGWILSILDELQLSPQ 290  

                   cqvedrefpePPvailPlGTGNdLarvLgwgggydginekllkilkeale
                             PPv++lPlGTGNdLar+L+wgggy++  e++ kil +++ 
     ah00678   291 ----------PPVGVLPLGTGNDLARTLNWGGGYTD--EPVSKILCQVE- 327  

                   eadtvkldrW<-*
                   ++ +v+ldrW   
     ah00678   328 DGTVVQLDRW    337  

SM00045: domain 1 of 1, from 363 to 520: score 321.0, E = 8.5e-92
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                      ++NNYFS G+DA+++LeFH+sREanPekFnSR++NK++Y++ +++++
     ah00678   363    VFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGAAFSDF 409  

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                   + r+++dL+++++++cDG d+++++++l+ ++I++LNIP+y++Gt++WG+
     ah00678   410 LQRSSRDLSKHVKVVCDGTDLTPKIQELKFQCIVFLNIPRYCAGTMPWGN 459  

                   PfgskkkravcgifkksftdkedlnfekqsidDgllEVVGvtgamhmaqv
                                     ++++ ++fe+q++dDg++EV+G+t+a ++a+ 
     ah00678   460 ------------------PGDH-HDFEPQRHDDGYIEVIGFTMASLAAL- 489  

                   rtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQVDGEP<-
                       qvg++         g+R+ QC+ev     +lt k+iPmQVDGEP  
     ah00678   490 ----QVGGH---------GERLHQCREV----MLLTYKSIPMQVDGEP   520  

                   *
                    
     ah00678     -   -    

SM00248: domain 1 of 2, from 764 to 794: score 27.9, E = 0.0014
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      d ++ LH+Aa++gn e+vk++ld+g++++ +   
     ah00678   764    DHCSLLHYAAKTGNGEIVKYILDHGPsELLD    794  

SM00248: domain 2 of 2, from 800 to 829: score 23.6, E = 0.028
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+LH Aa+  n  v++lL+d+ga++ +   
     ah00678   800    TGETALHKAACQRNRAVCQLLVDAGASLRK    829  

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