hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-19461282/chunk_1/iprscan-20080806-19461282.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00691 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00617.10.ls RasGEF domain 334.7 1.5e-97 1 PF00617.10.fs RasGEF domain 332.9 5.1e-97 1 PF00621.11.fs RhoGEF domain 272.3 2.5e-80 1 PF00621.11.ls RhoGEF domain 274.1 2.6e-79 1 PF00618.10.fs Guanine nucleotide exchange factor for Ras-l 129.0 5e-37 1 PF00618.10.ls Guanine nucleotide exchange factor for Ras-l 131.0 3.1e-36 1 PF00169.19.fs PH domain 115.3 1.2e-34 2 PF00169.19.ls PH domain 119.3 9.8e-33 2 PF00612.17.fs IQ calmodulin-binding motif 20.0 6.8e-05 1 PF00612.17.ls IQ calmodulin-binding motif 22.0 0.0019 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/2 60 166 .. 1 92 [] 78.9 1.4e-20 PF00169.19.fs 1/2 60 166 .. 1 92 [] 76.9 5.9e-23 PF00612.17.fs 1/1 240 260 .. 1 21 [] 20.0 6.8e-05 PF00612.17.ls 1/1 240 260 .. 1 21 [] 22.0 0.0019 PF00621.11.ls 1/1 281 462 .. 1 207 [] 274.1 2.6e-79 PF00621.11.fs 1/1 281 462 .. 1 207 [] 272.3 2.5e-80 PF00169.19.ls 2/2 494 621 .. 1 92 [] 40.4 5.7e-09 PF00169.19.fs 2/2 494 621 .. 1 92 [] 38.4 3.2e-11 PF00618.10.fs 1/1 671 1003 .. 1 109 [] 129.0 5e-37 PF00618.10.ls 1/1 671 1003 .. 1 109 [] 131.0 3.1e-36 PF00617.10.ls 1/1 1056 1241 .. 1 227 [] 334.7 1.5e-97 PF00617.10.fs 1/1 1056 1241 .. 1 227 [] 332.9 5.1e-97 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 2, from 60 to 166: score 78.9, E = 1.4e-20 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +++G+L+k+++ + +w+ +f L ++ L+y++++++++p g + L+ ah00691 60 GTRKGYLSKRSsDNTKWQTKWFALLQNLLFYFESDSsSRPSGLYLLE 106 giqvtkvpdn..........krkncFeirt.dr..etlllqaeseeerke g+ ++++p++++ + +++ +++++F + +++++++ l+l++e+++++ e ah00691 107 GCVCDRAPSPkpalsakeplEKQHYFTVNFsHEnqKALELRTEDAKDCDE 156 Wvkaiqsair<-* Wv+ai a++ ah00691 157 WVAAIAHASY 166 PF00169.19.fs: domain 1 of 2, from 60 to 166: score 76.9, E = 5.9e-23 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +++G+L+k+++ + +w+ +f L ++ L+y++++++++p g + L+ ah00691 60 GTRKGYLSKRSsDNTKWQTKWFALLQNLLFYFESDSsSRPSGLYLLE 106 giqvtkvpdn..........krkncFeirt.dr..etlllqaeseeerke g+ ++++p++++ + +++ +++++F + +++++++ l+l++e+++++ e ah00691 107 GCVCDRAPSPkpalsakeplEKQHYFTVNFsHEnqKALELRTEDAKDCDE 156 Wvkaiqsair<-* Wv+ai a++ ah00691 157 WVAAIAHASY 166 PF00612.17.fs: domain 1 of 1, from 240 to 260: score 20.0, E = 6.8e-05 *->rraaikIQaawRGylaRkryk<-* + + k+Q++ RG+l+R++ k ah00691 240 IKKIKKVQSFLRGWLCRRKWK 260 PF00612.17.ls: domain 1 of 1, from 240 to 260: score 22.0, E = 0.0019 *->rraaikIQaawRGylaRkryk<-* + + k+Q++ RG+l+R++ k ah00691 240 IKKIKKVQSFLRGWLCRRKWK 260 PF00621.11.ls: domain 1 of 1, from 281 to 462: score 274.1, E = 2.6e-79 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++++le+E++Yv++L+il+n++++pLr+aa+s+kp++t+dd+++iF ah00691 281 VVFSMLEAEAEYVQQLHILVNNFLRPLRMAASSKKPPITHDDVSSIF 327 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+i+++h++F++ +L+ariss+ ++++l+dlF++l ah00691 328 LNSETIMFLHQIFYQ-GLKARISSW------------PTLVLADLFDIL- 363 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +++l++Y+e+++n++y+ ++l++ +++n++F+++l+ +ea+++++ ah00691 364 LPMLNIYQEFVRNHQYSLQILAH---CKQNRDFDKLLKHYEAKPDCE--- 407 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ++tL+++L++P+++i+rY+L+L+eLL+htp+ ++ e+++L++a+++ ah00691 408 ---ERTLETFLTYPMFQIPRYILTLHELLAHTPH--EHVERNSLDYAKSK 452 lqdlaksiNe<-* l++l++++++ ah00691 453 LEELSRIMHD 462 PF00621.11.fs: domain 1 of 1, from 281 to 462: score 272.3, E = 2.5e-80 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++++le+E++Yv++L+il+n++++pLr+aa+s+kp++t+dd+++iF ah00691 281 VVFSMLEAEAEYVQQLHILVNNFLRPLRMAASSKKPPITHDDVSSIF 327 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+i+++h++F++ +L+ariss+ ++++l+dlF++l ah00691 328 LNSETIMFLHQIFYQ-GLKARISSW------------PTLVLADLFDIL- 363 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +++l++Y+e+++n++y+ ++l++ +++n++F+++l+ +ea+++++ ah00691 364 LPMLNIYQEFVRNHQYSLQILAH---CKQNRDFDKLLKHYEAKPDCE--- 407 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ++tL+++L++P+++i+rY+L+L+eLL+htp+ ++ e+++L++a+++ ah00691 408 ---ERTLETFLTYPMFQIPRYILTLHELLAHTPH--EHVERNSLDYAKSK 452 lqdlaksiNe<-* l++l++++++ ah00691 453 LEELSRIMHD 462 PF00169.19.ls: domain 2 of 2, from 494 to 621: score 40.4, E = 5.7e-09 *->vikeGwLlkkg...............gkkswkkRyfvLfddvLlyyk +++G L + +++++ ++++ ++ ++k+ +R ++Lf+++L+++ ah00691 494 FVRQGSLIQVPmsekgkitrgrlgslSLKKEGERQCFLFSKHLIICT 540 dkk.....kkpkgsipLsgiqvtkvpdn.............krkncFeir +++++ + ++ g+i+L ++++ + p++++++ ++++++ + ++ + + ah00691 541 RGSggklhLTKNGVISLIDCTLLEEPESteeeakgsgqdidHLDFKIGVE 590 t.dr..etlllqaeseeerkeWvkaiqsair<-* +d ++ t++l a+s +e+ W ++i++++ ah00691 591 PkDSppFTVILVASSRQEKAAWTSDISQCVD 621 PF00169.19.fs: domain 2 of 2, from 494 to 621: score 38.4, E = 3.2e-11 *->vikeGwLlkkg...............gkkswkkRyfvLfddvLlyyk +++G L + +++++ ++++ ++ ++k+ +R ++Lf+++L+++ ah00691 494 FVRQGSLIQVPmsekgkitrgrlgslSLKKEGERQCFLFSKHLIICT 540 dkk.....kkpkgsipLsgiqvtkvpdn.............krkncFeir +++++ + ++ g+i+L ++++ + p++++++ ++++++ + ++ + + ah00691 541 RGSggklhLTKNGVISLIDCTLLEEPESteeeakgsgqdidHLDFKIGVE 590 t.dr..etlllqaeseeerkeWvkaiqsair<-* +d ++ t++l a+s +e+ W ++i++++ ah00691 591 PkDSppFTVILVASSRQEKAAWTSDISQCVD 621 PF00618.10.fs: domain 1 of 1, from 671 to 1003: score 129.0, E = 5e-37 *->qvkagtlekLvehLtshsklDssFvstFLlTYRsFttpaeLlekLie q++++++e+L+e+Lt+ ++l+++F++tFL++YR+Ftt++ +l+kLi ah00691 671 QIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTTAIVVLDKLIT 717 Ry.w.............................................. y+++ + + ++ + ++++++ ++++++++ +++ +++++ + + ah00691 718 IYkKpisaiparslellfasgqnnkllygeppkspratrkfssppplsit 767 ..seippp.nlqssknsweekkk........................... ++s +++ ++l++++++ +++k+ + + ++++ ++ + ++ ++ + ah00691 768 ktSSPSRRrKLSLNIPIITGGKAldlaalscnsngytsmysamspfskat 817 .................................................. ++++ +++ +++ +++++++++++++++ ++++++ + +++++ ++ ah00691 818 ldtsklyvsssftnkipdegdttpekpedpsalskqssevsmreesdidq 867 .................................................. +++++++++++++++++++++ +++++++ + + +++ ++ ++ +++ ah00691 868 nqsddgdtetsptkspttpksvknknssefplfsynngvvmtscreldnn 917 .................................................l ++ + + + + +++++++++ ++ + + + ++++++++++ + ah00691 918 rsalsaasafaiataganegtpnkekyrrmslasagfppdqrngdkefvI 967 lkpiqlrvlnvlrhWvenyfeDFadeddpellsrLleF<-* ++ + +rvlnvlrhWv+++ +DF e+++el+ +++ F ah00691 968 RRAATNRVLNVLRHWVSKHSQDF--ETNDELKCKVIGF 1003 PF00618.10.ls: domain 1 of 1, from 671 to 1003: score 131.0, E = 3.1e-36 *->qvkagtlekLvehLtshsklDssFvstFLlTYRsFttpaeLlekLie q++++++e+L+e+Lt+ ++l+++F++tFL++YR+Ftt++ +l+kLi ah00691 671 QIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTTAIVVLDKLIT 717 Ry.w.............................................. y+++ + + ++ + ++++++ ++++++++ +++ +++++ + + ah00691 718 IYkKpisaiparslellfasgqnnkllygeppkspratrkfssppplsit 767 ..seippp.nlqssknsweekkk........................... ++s +++ ++l++++++ +++k+ + + ++++ ++ + ++ ++ + ah00691 768 ktSSPSRRrKLSLNIPIITGGKAldlaalscnsngytsmysamspfskat 817 .................................................. ++++ +++ +++ +++++++++++++++ ++++++ + +++++ ++ ah00691 818 ldtsklyvsssftnkipdegdttpekpedpsalskqssevsmreesdidq 867 .................................................. +++++++++++++++++++++ +++++++ + + +++ ++ ++ +++ ah00691 868 nqsddgdtetsptkspttpksvknknssefplfsynngvvmtscreldnn 917 .................................................l ++ + + + + +++++++++ ++ + + + ++++++++++ + ah00691 918 rsalsaasafaiataganegtpnkekyrrmslasagfppdqrngdkefvI 967 lkpiqlrvlnvlrhWvenyfeDFadeddpellsrLleF<-* ++ + +rvlnvlrhWv+++ +DF e+++el+ +++ F ah00691 968 RRAATNRVLNVLRHWVSKHSQDF--ETNDELKCKVIGF 1003 PF00617.10.ls: domain 1 of 1, from 1056 to 1241: score 334.7, E = 1.5e-97 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +++++le+A+QLTLl+h +fkkI+++ef+g q+W+k+ ah00691 1056 ENHSALEIAEQLTLLDHLVFKKIPYEEFFG--------QGWMKL--- 1091 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev +kner+p+i+kt+k+fN +n ++++I+++e d+ +R+++ ah00691 1092 EKNERTPYIMKTTKHFNDISNLIASEIIRNE-----------DINARVSA 1130 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i+k+++VAd+cR+L+N+n++l+I+s++++s+I+RLkkTW kv++q+++l ah00691 1131 IEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKAL- 1179 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs ++L+kL++s+++f+n+Re Lk+++p PCVP++G+YL+ ah00691 1180 IDKLQKLVSSEGRFKNLREALKNCDP-------------PCVPYLGMYLT 1216 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DL f+eeG+p+y+e ++lvNFsK+r+ ah00691 1217 DLAFIEEGTPNYTE-----DGLVNFSKMRM 1241 PF00617.10.fs: domain 1 of 1, from 1056 to 1241: score 332.9, E = 5.1e-97 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +++++le+A+QLTLl+h +fkkI+++ef+g q+W+k+ ah00691 1056 ENHSALEIAEQLTLLDHLVFKKIPYEEFFG--------QGWMKL--- 1091 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev +kner+p+i+kt+k+fN +n ++++I+++e d+ +R+++ ah00691 1092 EKNERTPYIMKTTKHFNDISNLIASEIIRNE-----------DINARVSA 1130 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i+k+++VAd+cR+L+N+n++l+I+s++++s+I+RLkkTW kv++q+++l ah00691 1131 IEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKAL- 1179 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs ++L+kL++s+++f+n+Re Lk+++p PCVP++G+YL+ ah00691 1180 IDKLQKLVSSEGRFKNLREALKNCDP-------------PCVPYLGMYLT 1216 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DL f+eeG+p+y+e ++lvNFsK+r+ ah00691 1217 DLAFIEEGTPNYTE-----DGLVNFSKMRM 1241 //