hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-19521850/chunk_1/iprscan-20080806-19521850.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00748 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 586.4 2.5e-173 21 PF00096.16.fs Zinc finger, C2H2 type 546.4 2.7e-161 21 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 14.8 6.6e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/21 24 46 .. 1 24 [] 33.2 8.3e-07 PF00096.16.fs 1/21 24 46 .. 1 24 [] 31.2 1.5e-06 PF00096.16.fs 2/21 52 74 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 2/21 52 74 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 3/21 80 102 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 3/21 80 102 .. 1 24 [] 29.8 9e-06 PF00096.16.fs 4/21 108 130 .. 1 24 [] 25.3 4.6e-05 PF00096.16.ls 4/21 108 130 .. 1 24 [] 27.3 5.1e-05 PF00096.16.ls 5/21 199 221 .. 1 24 [] 20.0 0.0078 PF00096.16.ls 6/21 227 249 .. 1 24 [] 31.6 2.6e-06 PF00096.16.fs 6/21 227 249 .. 1 24 [] 29.6 3.9e-06 PF00096.16.ls 7/21 255 277 .. 1 24 [] 23.4 0.00073 PF00096.16.fs 8/21 283 305 .. 1 24 [] 24.1 9.2e-05 PF00096.16.ls 8/21 283 305 .. 1 24 [] 26.1 0.00012 PF00096.16.fs 9/21 509 531 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 9/21 509 531 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 10/21 537 559 .. 1 24 [] 27.6 1.3e-05 PF00096.16.ls 10/21 537 559 .. 1 24 [] 29.5 1.1e-05 PF00096.16.fs 11/21 565 587 .. 1 24 [] 30.6 2.3e-06 PF00096.16.ls 11/21 565 587 .. 1 24 [] 32.5 1.3e-06 PF00096.16.ls 12/21 593 615 .. 1 24 [] 19.6 0.01 PF00096.16.ls 13/21 709 731 .. 1 24 [] 25.9 0.00013 PF00096.16.fs 13/21 711 731 .. 3 24 .] 25.3 4.6e-05 PF00096.16.fs 14/21 737 759 .. 1 24 [] 30.1 2.9e-06 PF00096.16.ls 14/21 737 759 .. 1 24 [] 32.1 1.8e-06 PF00096.16.ls 15/21 765 787 .. 1 24 [] 29.3 1.3e-05 PF00096.16.fs 15/21 765 787 .. 1 24 [] 27.3 1.5e-05 PF00096.16.ls 16/21 793 815 .. 1 24 [] 20.9 0.0043 PF00096.16.ls 17/21 1199 1222 .. 1 24 [] 21.7 0.0024 PF00096.16.fs 18/21 1228 1250 .. 1 24 [] 27.6 1.2e-05 PF00096.16.ls 18/21 1228 1250 .. 1 24 [] 29.6 1e-05 PF00096.16.fs 19/21 1264 1286 .. 1 24 [] 29.4 4.3e-06 PF00096.16.ls 19/21 1264 1286 .. 1 24 [] 31.4 2.9e-06 PF00096.16.fs 20/21 1292 1314 .. 1 24 [] 29.1 5.3e-06 PF00096.16.ls 20/21 1292 1314 .. 1 24 [] 31.1 3.7e-06 PF00096.16.fs 21/21 1320 1343 .. 1 24 [] 24.5 7.3e-05 PF00096.16.ls 21/21 1320 1343 .. 1 24 [] 26.5 8.9e-05 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 21, from 24 to 46: score 33.2, E = 8.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C k F+ +s+L rH+r+H ah00748 24 HVCP-YCAKEFRKPSDLVRHIRIH 46 PF00096.16.fs: domain 1 of 21, from 24 to 46: score 31.2, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C k F+ +s+L rH+r+H ah00748 24 HVCP-YCAKEFRKPSDLVRHIRIH 46 PF00096.16.fs: domain 2 of 21, from 52 to 74: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C ++F ks+L++H++tH ah00748 52 FKCP-QCFRAFAVKSTLTAHIKTH 74 PF00096.16.ls: domain 2 of 21, from 52 to 74: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C ++F ks+L++H++tH ah00748 52 FKCP-QCFRAFAVKSTLTAHIKTH 74 PF00096.16.fs: domain 3 of 21, from 80 to 102: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksFs++++Lk H+r H ah00748 80 FKCQ-YCMKSFSTSGSLKVHIRLH 102 PF00096.16.ls: domain 3 of 21, from 80 to 102: score 29.8, E = 9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksFs++++Lk H+r H ah00748 80 FKCQ-YCMKSFSTSGSLKVHIRLH 102 PF00096.16.fs: domain 4 of 21, from 108 to 130: score 25.3, E = 4.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C+k+F+++++ k+H+ +H ah00748 108 FACP-HCDKKFRTSGHRKTHIASH 130 PF00096.16.ls: domain 4 of 21, from 108 to 130: score 27.3, E = 5.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C+k+F+++++ k+H+ +H ah00748 108 FACP-HCDKKFRTSGHRKTHIASH 130 PF00096.16.ls: domain 5 of 21, from 199 to 221: score 20.0, E = 0.0078 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C+++++ + +Lk+H+r+H ah00748 199 YKCF-YCHRAYKKSCHLKQHIRSH 221 PF00096.16.ls: domain 6 of 21, from 227 to 249: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F + + Lk+H+rtH ah00748 227 FKCS-QCGRGFVSAGVLKAHIRTH 249 PF00096.16.fs: domain 6 of 21, from 227 to 249: score 29.6, E = 3.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F + + Lk+H+rtH ah00748 227 FKCS-QCGRGFVSAGVLKAHIRTH 249 PF00096.16.ls: domain 7 of 21, from 255 to 277: score 23.4, E = 0.00073 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +C+ +F++ ++L+rH+ +H ah00748 255 FKCL-ICNGAFTTGGSLRRHMGIH 277 PF00096.16.fs: domain 8 of 21, from 283 to 305: score 24.1, E = 9.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C+k+F+++ n k+H++tH ah00748 283 YMCP-YCQKTFKTSLNCKKHMKTH 305 PF00096.16.ls: domain 8 of 21, from 283 to 305: score 26.1, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C+k+F+++ n k+H++tH ah00748 283 YMCP-YCQKTFKTSLNCKKHMKTH 305 PF00096.16.fs: domain 9 of 21, from 509 to 531: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k F+ +s+Lk+H r+H ah00748 509 YRCD-YCNKGFKKSSHLKQHVRSH 531 PF00096.16.ls: domain 9 of 21, from 509 to 531: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k F+ +s+Lk+H r+H ah00748 509 YRCD-YCNKGFKKSSHLKQHVRSH 531 PF00096.16.fs: domain 10 of 21, from 537 to 559: score 27.6, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cg+ F +++ Lk+H +tH ah00748 537 YKCK-LCGRGFVSSGVLKSHEKTH 559 PF00096.16.ls: domain 10 of 21, from 537 to 559: score 29.5, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cg+ F +++ Lk+H +tH ah00748 537 YKCK-LCGRGFVSSGVLKSHEKTH 559 PF00096.16.fs: domain 11 of 21, from 565 to 587: score 30.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+ sF+++++L+rH+ tH ah00748 565 FSCS-VCNASFTTNGSLTRHMATH 587 PF00096.16.ls: domain 11 of 21, from 565 to 587: score 32.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+ sF+++++L+rH+ tH ah00748 565 FSCS-VCNASFTTNGSLTRHMATH 587 PF00096.16.ls: domain 12 of 21, from 593 to 615: score 19.6, E = 0.01 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp C + F++ + k+H+++H ah00748 593 YKCP-FCEEGFRTTVHCKKHMKRH 615 PF00096.16.ls: domain 13 of 21, from 709 to 731: score 25.9, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* C+ +C ksF+ +s+L rH r+H ah00748 709 NCCT-YCPKSFKKPSDLVRHVRIH 731 PF00096.16.fs: domain 13 of 21, from 711 to 731: score 25.3, E = 4.6e-05 *->CpfdCgksFsrksnLkrHlrtH<-* C+ +C ksF+ +s+L rH r+H ah00748 711 CT-YCPKSFKKPSDLVRHVRIH 731 PF00096.16.fs: domain 14 of 21, from 737 to 759: score 30.1, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+ ks+L H +tH ah00748 737 YKCD-ECGKSFTVKSTLDCHVKTH 759 PF00096.16.ls: domain 14 of 21, from 737 to 759: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+ ks+L H +tH ah00748 737 YKCD-ECGKSFTVKSTLDCHVKTH 759 PF00096.16.ls: domain 15 of 21, from 765 to 787: score 29.3, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C +Fs+k++Lk H+r H ah00748 765 FSCH-VCSNAFSTKGSLKVHMRLH 787 PF00096.16.fs: domain 15 of 21, from 765 to 787: score 27.3, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C +Fs+k++Lk H+r H ah00748 765 FSCH-VCSNAFSTKGSLKVHMRLH 787 PF00096.16.ls: domain 16 of 21, from 793 to 815: score 20.9, E = 0.0043 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C +F++++ k+H++ H ah00748 793 FKCP-HCELRFRTSGRRKTHMQFH 815 PF00096.16.ls: domain 17 of 21, from 1199 to 1222: score 21.7, E = 0.0024 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C +C+++Fs+ + L +H + H ah00748 1199 HQCL-ECDRAFSSAAVLMHHSKEvH 1222 PF00096.16.fs: domain 18 of 21, from 1228 to 1250: score 27.6, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C k+F+r +Lk H++tH ah00748 1228 HGCP-VCRKAFKRATHLKEHMQTH 1250 PF00096.16.ls: domain 18 of 21, from 1228 to 1250: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C k+F+r +Lk H++tH ah00748 1228 HGCP-VCRKAFKRATHLKEHMQTH 1250 PF00096.16.fs: domain 19 of 21, from 1264 to 1286: score 29.4, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C k+F +s+L+rH r+H ah00748 1264 FKCD-TCEKAFAKPSQLERHSRIH 1286 PF00096.16.ls: domain 19 of 21, from 1264 to 1286: score 31.4, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C k+F +s+L+rH r+H ah00748 1264 FKCD-TCEKAFAKPSQLERHSRIH 1286 PF00096.16.fs: domain 20 of 21, from 1292 to 1314: score 29.1, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ C k+F++ks L+ H+++H ah00748 1292 FHCT-LCEKAFNQKSALQVHMKKH 1314 PF00096.16.ls: domain 20 of 21, from 1292 to 1314: score 31.1, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ C k+F++ks L+ H+++H ah00748 1292 FHCT-LCEKAFNQKSALQVHMKKH 1314 PF00096.16.fs: domain 21 of 21, from 1320 to 1343: score 24.5, E = 7.3e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC +C F++ksn+k H+++ H ah00748 1320 YKCA-YCVMGFTQKSNMKLHMKRaH 1343 PF00096.16.ls: domain 21 of 21, from 1320 to 1343: score 26.5, E = 8.9e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC +C F++ksn+k H+++ H ah00748 1320 YKCA-YCVMGFTQKSNMKLHMKRaH 1343 //