hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-19521850/chunk_1/iprscan-20080806-19521850.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah00748 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 557.3 6.2e-163 21 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/21 24 46 .. 1 23 [] 29.8 0.00036 SM00355 2/21 52 74 .. 1 23 [] 24.9 0.011 SM00355 3/21 80 102 .. 1 23 [] 28.8 0.00076 SM00355 4/21 108 130 .. 1 23 [] 25.0 0.01 SM00355 5/21 199 221 .. 1 23 [] 17.5 1.9 SM00355 6/21 227 249 .. 1 23 [] 29.4 0.00049 SM00355 7/21 255 277 .. 1 23 [] 25.4 0.0078 SM00355 8/21 283 305 .. 1 23 [] 28.6 0.00089 SM00355 9/21 509 531 .. 1 23 [] 29.1 0.00062 SM00355 10/21 537 559 .. 1 23 [] 27.6 0.0018 SM00355 11/21 565 587 .. 1 23 [] 31.5 0.00011 SM00355 12/21 593 615 .. 1 23 [] 24.4 0.015 SM00355 13/21 709 731 .. 1 23 [] 25.2 0.0092 SM00355 14/21 737 759 .. 1 23 [] 26.3 0.0043 SM00355 15/21 765 787 .. 1 23 [] 28.7 0.00082 SM00355 16/21 793 815 .. 1 23 [] 22.4 0.064 SM00355 17/21 1199 1222 .. 1 23 [] 22.8 0.048 SM00355 18/21 1228 1250 .. 1 23 [] 27.5 0.0018 SM00355 19/21 1264 1286 .. 1 23 [] 26.9 0.0029 SM00355 20/21 1292 1314 .. 1 23 [] 30.7 0.0002 SM00355 21/21 1320 1343 .. 1 23 [] 24.8 0.012 Alignments of top-scoring domains: SM00355: domain 1 of 21, from 24 to 46: score 29.8, E = 0.00036 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C k f+ +++L+rH+r+H ah00748 24 HVCPY-CAKEFRKPsDLVRHIRIH 46 SM00355: domain 2 of 21, from 52 to 74: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C + f k+ L+ H+++H ah00748 52 FKCPQ-CFRAFAVKsTLTAHIKTH 74 SM00355: domain 3 of 21, from 80 to 102: score 28.8, E = 0.00076 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C ksfs+ ++Lk H+r H ah00748 80 FKCQY-CMKSFSTSgSLKVHIRLH 102 SM00355: domain 4 of 21, from 108 to 130: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C+k+f++ ++ k H+ +H ah00748 108 FACPH-CDKKFRTSgHRKTHIASH 130 SM00355: domain 5 of 21, from 199 to 221: score 17.5, E = 1.9 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C++ ++ +Lk+H+r+H ah00748 199 YKCFY-CHRAYKKScHLKQHIRSH 221 SM00355: domain 6 of 21, from 227 to 249: score 29.4, E = 0.00049 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ f s++ Lk H+r+H ah00748 227 FKCSQ-CGRGFVSAgVLKAHIRTH 249 SM00355: domain 7 of 21, from 255 to 277: score 25.4, E = 0.0078 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC i C+ f++ ++L+rHm +H ah00748 255 FKCLI-CNGAFTTGgSLRRHMGIH 277 SM00355: domain 8 of 21, from 283 to 305: score 28.6, E = 0.00089 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp+ C+k+f++ + k+Hm++H ah00748 283 YMCPY-CQKTFKTSlNCKKHMKTH 305 SM00355: domain 9 of 21, from 509 to 531: score 29.1, E = 0.00062 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k f+ ++Lk+H+r+H ah00748 509 YRCDY-CNKGFKKSsHLKQHVRSH 531 SM00355: domain 10 of 21, from 537 to 559: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+ f s + Lk H ++H ah00748 537 YKCKL-CGRGFVSSgVLKSHEKTH 559 SM00355: domain 11 of 21, from 565 to 587: score 31.5, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C+ sf++ ++L+rHm +H ah00748 565 FSCSV-CNASFTTNgSLTRHMATH 587 SM00355: domain 12 of 21, from 593 to 615: score 24.4, E = 0.015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ C + f++ + k+Hm++H ah00748 593 YKCPF-CEEGFRTTvHCKKHMKRH 615 SM00355: domain 13 of 21, from 709 to 731: score 25.2, E = 0.0092 *->ykCpigCgksfssk.aLkrHmrvH<-* C++ C+ksf+ +++L+rH+r+H ah00748 709 NCCTY-CPKSFKKPsDLVRHVRIH 731 SM00355: domain 14 of 21, from 737 to 759: score 26.3, E = 0.0043 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksf+ k+ L H+++H ah00748 737 YKCDE-CGKSFTVKsTLDCHVKTH 759 SM00355: domain 15 of 21, from 765 to 787: score 28.7, E = 0.00082 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C+ fs+k++Lk Hmr H ah00748 765 FSCHV-CSNAFSTKgSLKVHMRLH 787 SM00355: domain 16 of 21, from 793 to 815: score 22.4, E = 0.064 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C +f++ + k Hm+ H ah00748 793 FKCPH-CELRFRTSgRRKTHMQFH 815 SM00355: domain 17 of 21, from 1199 to 1222: score 22.8, E = 0.048 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++ fss+ L +H ++vH ah00748 1199 HQCLE-CDRAFSSAaVLMHHSKeVH 1222 SM00355: domain 18 of 21, from 1228 to 1250: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C k f+++++Lk+Hm++H ah00748 1228 HGCPV-CRKAFKRAtHLKEHMQTH 1250 SM00355: domain 19 of 21, from 1264 to 1286: score 26.9, E = 0.0029 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ C k f +++L+rH r+H ah00748 1264 FKCDT-CEKAFAKPsQLERHSRIH 1286 SM00355: domain 20 of 21, from 1292 to 1314: score 30.7, E = 0.0002 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C k f++k+aL+ Hm++H ah00748 1292 FHCTL-CEKAFNQKsALQVHMKKH 1314 SM00355: domain 21 of 21, from 1320 to 1343: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmr.vH<-* ykC + C + f++k+++k Hm++ H ah00748 1320 YKCAY-CVMGFTQKsNMKLHMKrAH 1343 //