hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19580981/chunk_1/iprscan-20080806-19580981.nocrc
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Query sequence: ah00907
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00233.9.fs 3'5'-cyclic nucleotide phosphodiesterase       215.1      1e-72   1
PF00233.9.ls 3'5'-cyclic nucleotide phosphodiesterase       217.1    3.6e-62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00233.9.fs   1/1     308   546 ..     1   255 []   215.1    1e-72
PF00233.9.ls   1/1     308   546 ..     1   255 []   217.1  3.6e-62

Alignments of top-scoring domains:
PF00233.9.fs: domain 1 of 1, from 308 to 546: score 215.1, E = 1e-72
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN  HA+dVtQ++h+ l+ ++l   Lt+l + + + AAa HDvDH+
     ah00907   308    YHNAVHAADVTQAMHCYLKEPKLASFLTPLDIMLGLLAAAAHDVDHP 354  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqdEecnIfqNL
                   G+n  F+i++  +  LA LY +  SVLEnHH  +++ +L+  e   + +L
     ah00907   355 GVNQPFLIKT--NHHLANLYQNM-SVLENHHWRSTIGMLR--ESRLLAHL 399  

                   skkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtqY
                   +k   +++       ILATD+      l++lk  +  k           +
     ah00907   400 PKEMTQDIEQQLGSLILATDINRQNEFLTRLKAHLHNK----------DL 439  

                   lldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlEr
                    l + +++   l+  +++AD+ np + w+ sk+w e++ eEF++QG lE 
     ah00907   440 RLEDAQDRHFMLQIALKCADICNPCRIWEMSKQWSERVCEEFYRQGELEQ 489  

                   elGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdi..q
                      l  +sp+c   + +++p  Q+gF+ +IveP+f ++a ++   +  + 
     ah00907   490 KFELE-ISPLCNQQK-DSIPSIQIGFMSYIVEPLFREWAHFTGN-STlsE 536  

                   plldtiedNr<-*
                    +l +++ N+   
     ah00907   537 NMLGHLAHNK    546  

PF00233.9.ls: domain 1 of 1, from 308 to 546: score 217.1, E = 3.6e-62
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN  HA+dVtQ++h+ l+ ++l   Lt+l + + + AAa HDvDH+
     ah00907   308    YHNAVHAADVTQAMHCYLKEPKLASFLTPLDIMLGLLAAAAHDVDHP 354  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqdEecnIfqNL
                   G+n  F+i++  +  LA LY +  SVLEnHH  +++ +L+  e   + +L
     ah00907   355 GVNQPFLIKT--NHHLANLYQNM-SVLENHHWRSTIGMLR--ESRLLAHL 399  

                   skkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtqY
                   +k   +++       ILATD+      l++lk  +  k           +
     ah00907   400 PKEMTQDIEQQLGSLILATDINRQNEFLTRLKAHLHNK----------DL 439  

                   lldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlEr
                    l + +++   l+  +++AD+ np + w+ sk+w e++ eEF++QG lE 
     ah00907   440 RLEDAQDRHFMLQIALKCADICNPCRIWEMSKQWSERVCEEFYRQGELEQ 489  

                   elGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdiqp.
                      l  +sp+c   + +++p  Q+gF+ +IveP+f ++a ++      ++
     ah00907   490 KFELE-ISPLCNQQK-DSIPSIQIGFMSYIVEPLFREWAHFTGNSTLSEn 537  

                   lldtiedNr<-*
                   +l +++ N+   
     ah00907   538 MLGHLAHNK    546  

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