hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-19580981/chunk_1/iprscan-20080806-19580981.nocrc
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Query sequence: ah00907
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00471                                                  38.1    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00471    1/1     306   473 ..     1    59 []    38.1  1.1e-06

Alignments of top-scoring domains:
SM00471: domain 1 of 1, from 306 to 473: score 38.1, E = 1.1e-06
                   *->hgetrleHslrVaqlarela..............ellllAALLHDiG
                      ++++++ H+ +V+q ++  +++++  +  ++ +  l llAA  HD++
     ah00907   306    NPYHNAVHAADVTQAMHCYLkepklasfltpldiMLGLLAAAAHDVD 352  

                   kp................................................
                   +p+ + +   + +++  +   + +  ++++ ++  +  ++++   + +++
     ah00907   353 HPgvnqpfliktnhhlanlyqnmsvlenhhwrstigmlresrllahlpke 402  

                   ..............................................slea
                      + +   ++     + ++ ++   + + + ++++ + ++  +++  + 
     ah00907   403 mtqdieqqlgslilatdinrqnefltrlkahlhnkdlrledaqdrhFMLQ 452  

                   rivklADrldalrrdr.yrrv<-*
                     +k+AD++ ++r ++ ++++   
     ah00907   453 IALKCADICNPCRIWEmSKQW    473  

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