hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20042414/chunk_1/iprscan-20080806-20042414.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah01145
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00209.9.fs Sodium:neurotransmitter symporter family       708.3   5.1e-210   1
PF00209.9.ls Sodium:neurotransmitter symporter family       386.3   4.3e-113   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00209.9.fs   1/1      49   333 ..     1   299 [.   708.3 5.1e-210
PF00209.9.ls   1/1      49   367 .]     1   624 []   386.3 4.3e-113

Alignments of top-scoring domains:
PF00209.9.fs: domain 1 of 1, from 49 to 333: score 708.3, E = 5.1e-210
                   *->RetWsgKldFlLSvvGfaVGLGNVWRFPYLCYKNGGGAFLIPYlifL
                      Re+Ws+K+dF+LSv+G +VGLGNVWRFPYLCYKNGGGAFLIPY+ifL
     ah01145    49    REKWSSKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFL 95   

                   ivaGIPLFFLElaLGQytreGaitvWrkICPlFkGiGYAsivivfyvgiY
                   +  G P+FFLE+ +GQyt+eG+it+W+kICPlF GiGYAs+viv+++++Y
     ah01145    96 FGSGLPVFFLEIIIGQYTSEGGITCWEKICPLFSGIGYASVVIVSLLNVY 145  

                   YnVIiAWAlyYLfsSFTteLPWasCnnsWNtprCveefdkenssngslpa
                   Y+VI+AWA+yYLf+SF+ eLPWa+Cn+sWNtp+C+e+++++n s +    
     ah01145   146 YIVILAWATYYLFQSFQKELPWAHCNHSWNTPHCMEDTMRKNKSVW---- 191  

                   ltavnlsnlssyslertSPveEFWeRgVLhlHeSsGIsdlGelrWeLtlC
                    ++ +++n       +tSPv+EFWeR+VL+l  S GI+++G+l+W+L+lC
     ah01145   192 -ITISSTN-------FTSPVIEFWERNVLSL--SPGIDHPGSLKWDLALC 231  

                   LllaWvvvyFciwKGVKssGKVVYFTATFPYvvLlvLLvRGvTLPGAadG
                   Lll+W+v++FciwKGV s+GKVVYFTATFP+ +LlvLLvRG+TLPGA  G
     ah01145   232 LLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVRGLTLPGAGAG 281  

                   IkfYLtPdfskLldPqVWiDAAtQIFFSLGiGfGvLiAfaSYNkfhNNcY
                   IkfYL+Pd+ +L+dPqVWiDA+tQIFFS++i++G+++ ++SYNk+++N Y
     ah01145   282 IKFYLYPDITRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSY 331  

                   rD<-*
                   r+   
     ah01145   332 RS    333  

PF00209.9.ls: domain 1 of 1, from 49 to 367: score 386.3, E = 4.3e-113
                   *->RetWsgKldFlLSvvGfaVGLGNVWRFPYLCYKNGGGAFLIPYlifL
                      Re+Ws+K+dF+LSv+G +VGLGNVWRFPYLCYKNGGGAFLIPY+ifL
     ah01145    49    REKWSSKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFL 95   

                   ivaGIPLFFLElaLGQytreGaitvWrkICPlFkGiGYAsivivfyvgiY
                   +  G P+FFLE+ +GQyt+eG+it+W+kICPlF GiGYAs+viv+++++Y
     ah01145    96 FGSGLPVFFLEIIIGQYTSEGGITCWEKICPLFSGIGYASVVIVSLLNVY 145  

                   YnVIiAWAlyYLfsSFTteLPWasCnnsWNtprCveefdkenssngslpa
                   Y+VI+AWA+yYLf+SF+ eLPWa+Cn+sWNtp+C+e+++++n s +    
     ah01145   146 YIVILAWATYYLFQSFQKELPWAHCNHSWNTPHCMEDTMRKNKSVW---- 191  

                   ltavnlsnlssyslertSPveEFWeRgVLhlHeSsGIsdlGelrWeLtlC
                    ++ +++n       +tSPv+EFWeR+VL+l  S GI+++G+l+W+L+lC
     ah01145   192 -ITISSTN-------FTSPVIEFWERNVLSL--SPGIDHPGSLKWDLALC 231  

                   LllaWvvvyFciwKGVKssGKVVYFTATFPYvvLlvLLvRGvTLPGAadG
                   Lll+W+v++FciwKGV s+GKVVYFTATFP+ +LlvLLvRG+TLPGA  G
     ah01145   232 LLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVRGLTLPGAGAG 281  

                   IkfYLtPdfskLldPqVWiDAAtQIFFSLGiGfGvLiAfaSYNkfhNNcY
                   IkfYL+Pd+ +L+dPqVWiDA+tQIFFS++i++G+++ ++SYNk+++N Y
     ah01145   282 IKFYLYPDITRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSY 331  

                   rDaiivsfiNsaTSflAGFVIFSiLGFMANIvqeqGveNaEkILlLsvlS
                   r+                                ++              
     ah01145   332 RS-------------------------WP---GLHCL------------- 340  

                   rDlIprHvNlSalTaDYsvYdvIseVAeseFavLgLaCllEDELdKaVQG
                       p                      +s                     
     ah01145   341 ----P----------------------KS--------------------- 343  

                   PGLAFIAYPeAvTmlPlSpfWsvLFFlMLltLGLDSqFggvEgiITAlvD
                                                                    D
     ah01145   344 ------------------------------------------------CD 345  

                   efprvlrlkkrRElftllvcvisfliGLlmvTeGGiYvftLfDyYaAsGf
                                                                aA   
     ah01145   346 ND-------------------------------------------AAA-- 350  

                   sLLfvvffEciavaWvYGidrFyddIkeMlGFrPglywklCWkfvSPlil
                                                                     
     ah01145     - -------------------------------------------------- -    

                   lflfifsivqyGlkPltYnnvIKEAaEryYvYPnWavalGWlmALSSmlc
                     +++ s+ +y        +                              
     ah01145   351 -HILVHSFFYY--------A------------------------------ 361  

                   iPlymiykllstkGdslkerlqqlttP<-*
                                  sl      + t    
     ah01145   362 ---------------SL------AWTG    367  

//