hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20153429/chunk_1/iprscan-20080806-20153429.nocrc
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Query sequence: ah01423
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00022.9.fs Actin                                          253.4    2.8e-79   1
PF00022.9.ls Actin                                           90.2    5.8e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00022.9.ls   1/1       1   277 [.     1   499 []    90.2  5.8e-24
PF00022.9.fs   1/1      10   273 ..   157   495 ..   253.4  2.8e-79

Alignments of top-scoring domains:
PF00022.9.ls: domain 1 of 1, from 1 to 277: score 90.2, E = 5.8e-24
                   *->gdevsAlViDnGsgttraGFAGEDaPkaviPsvvGlaGtprprgtgv
                                                              r+r    
     ah01423     1    ----------------------------------------RTRT--- 4    

                   evvdgegaeenkrkyyvGdelialsvpDrpgmevrnPiedGivedWDame
                                         ++s                         
     ah01423     5 -------------------L--HCS------------------------- 8    

                   kiWehvffeeLqvnPEKPLeehPlLlTEppwNppanREKatEimFEkfnv
                                 +                                   
     ah01423     9 --------------S----------------------------------- 9    

                   PAlylaknaVLsafAsGrtFS.v.sraQtgLVvDsGagvTsVvPVyeGyv
                            VL++ As+ +  +v+ r +tg+V+DsG+gvT+V+PV eGyv
     ah01423    10 ---------VLALAASWTS-RqVgERTLTGIVIDSGDGVTHVIPVAEGYV 49   

                   LqkairrsplaGddLtdqlrklLrsrknvevtPryliksKepveegqpas
                   ++ +i++ p+aG+d+t+ +++lLr+r   ev                   
     ah01423    50 IGSCIKHIPIAGRDITYFIQQLLRER---EV------------------- 77   

                   ftlrlpdvTeleGySyktyqeeevleeiKEsvCyVsddpfgdl.......
                                    + q+ e+   iKE++Cy+++d+ ++  + + ++
     ah01423    78 --------------GIPPEQSLETAKAIKEKYCYICPDIVKEFakydvdp 113  

                   ....edeeaasegikrneersgsiptvsEvYeLPDGTkkGfvrdldLyqa
                   ++   +++  +           +i ++   +                   
     ah01423   114 rkwiKQYTGIN-----------AINQKK--F------------------- 131  

                   tiifGaeRFrvPEiLFdPsligsesalnppnttkvevteqstvlqqktll
                   +i++G+eRF+ PEi+F+P+++++++ +                       
     ah01423   132 VIDVGYERFLGPEIFFHPEFANPDFME----------------------- 158  

                   fmGipeliydsinacDvDlRpsLlaNiVvtGGtsLlpGfteRLekElaql
                     +i++++ + i++c++D+R+ L++N+V++GG+++++ f+ RL+++l++ 
     ah01423   159 --SISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRV 206  

                   y.............klappgvisqkvkiiAppttvERkysaWiGGSILAS
                   ++ + + +++ ++++  p+ v    v +++++    ++y++W+GGS+LAS
     ah01423   207 VdarlrlseelsggRIKPKPV---EVQVVTHH---MQRYAVWFGGSMLAS 250  

                   LgtFqqmWvSKqEYeEhGssriVerkCk<-*
                   +++F q +++K++YeE+G+s i++       
     ah01423   251 TPEFFQVCHTKKDYEEYGPS-ICRHNPV    277  

PF00022.9.fs: domain 1 of 1, from 10 to 273: score 253.4, E = 2.8e-79
                   *->VLsafAsGrtFS.v.sraQtgLVvDsGagvTsVvPVyeGyvLqkair
                      VL++ As+ +  +v+ r +tg+V+DsG+gvT+V+PV eGyv++ +i+
     ah01423    10    VLALAASWTS-RqVgERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIK 55   

                   rsplaGddLtdqlrklLrsrknvevtPryliksKepveegqpasftlrlp
                   + p+aG+d+t+ +++lLr+r   ev                         
     ah01423    56 HIPIAGRDITYFIQQLLRER---EV------------------------- 77   

                   dvTeleGySyktyqeeevleeiKEsvCyVsddpfgdl...........ed
                              + q+ e+   iKE++Cy+++d+ ++  + + ++++   +
     ah01423    78 --------GIPPEQSLETAKAIKEKYCYICPDIVKEFakydvdprkwiKQ 119  

                   eeaasegikrneersgsiptvsEvYeLPDGTkkGfvrdldLyqatiifGa
                   ++  +           +i ++   +                   +i++G+
     ah01423   120 YTGIN-----------AINQKK--F-------------------VIDVGY 137  

                   eRFrvPEiLFdPsligsesalnppnttkvevteqstvlqqktllfmGipe
                   eRF+ PEi+F+P+++++++ +                         +i++
     ah01423   138 ERFLGPEIFFHPEFANPDFME-------------------------SISD 162  

                   liydsinacDvDlRpsLlaNiVvtGGtsLlpGfteRLekElaqly.....
                   ++ + i++c++D+R+ L++N+V++GG+++++ f+ RL+++l++ ++ + +
     ah01423   163 VVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVdarlr 212  

                   ........klappgvisqkvkiiAppttvERkysaWiGGSILASLgtFqq
                    +++ ++++  p+ v    v +++++    ++y++W+GGS+LAS+++F q
     ah01423   213 lseelsggRIKPKPV---EVQVVTHH---MQRYAVWFGGSMLASTPEFFQ 256  

                   mWvSKqEYeEhGssriVe<-*
                    +++K++YeE+G+s i++   
     ah01423   257 VCHTKKDYEEYGPS-ICR    273  

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