hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20153429/chunk_1/iprscan-20080806-20153429.nocrc
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Query sequence: ah01423
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00268                                                 211.2    9.4e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00268    1/1       1   277 [.     1   487 []   211.2  9.4e-59

Alignments of top-scoring domains:
SM00268: domain 1 of 1, from 1 to 277: score 211.2, E = 9.4e-59
                   *->npaiVIDnGSgtiKaGfagedsPrvvfPsivgrpkdgkgmvgsegsd
                                                          +++        
     ah01423     1    ------------------------------------RTR-------- 3    

                   kkdifvGdeallrqekRglpslelkyPiehGivenWDdmekiWdytffni
                                                                     
     ah01423     - -------------------------------------------------- -    

                   deLrvepdgeehpvLLTEpplNpksnrekileimFEtfnfpalyvaiqAV
                     L +++                                          V
     ah01423     4 -TLHCSS------------------------------------------V 10   

                   Lslyasgikts.atsmgrttGlViDsGdgvThvvPVvdGyvlphaikRid
                   L+l+as+  ts++++++ +tG+ViDsGdgvThv+PV +Gyv+ ++ik+i+
     ah01423    11 LALAASW--TSrQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIP 58   

                   iAGrdlTdyLkelLselifemnsrgyafntsaefeivreiKEklcyVaed
                   iAGrd+T+++++lL+e       r +   + +++e+++ iKEk+cy+++d
     ah01423    59 IAGRDITYFIQQLLRE-------REVGIPPEQSLETAKAIKEKYCYICPD 101  

                   fekemkkaressskessqeslviednlesqlpvsdskfdnetnsselekt
                   ++ke++k++ +  k+++                           +++ ++
     ah01423   102 IVKEFAKYDVDPRKWIK---------------------------QYTGIN 124  

                   YelPdGntikvGyVrpkkdeeqqqvihLanERFriPEiLFpisaskadas
                    +  +  +i+vG                 +ERF +PEi+F          
     ah01423   125 AINQKKFVIDVG-----------------YERFLGPEIFF---------- 147  

                   iidklqdsPeligleqkkinelvGihelvyesIqkcDidvRkdLyeNIVl
                          +Pe+ ++++++      i+++v+e+Iq+c+idvR++Ly+N+Vl
     ah01423   148 -------HPEFANPDFME-----SISDVVDEVIQNCPIDVRRPLYKNVVL 185  

                   sGGstlipGfgeRLekELkqlaPsrll.sek.....aklkklkvkviapp
                   sGGst++++fg+RL+++Lk+ +++rl  se+ ++++ k+k ++v+v +++
     ah01423   186 SGGSTMFRDFGRRLQRDLKRVVDARLRlSEElsggrIKPKPVEVQVVTHH 235  

                   erknaysvWlGGSiLAslstFedmwitkeEYeEsGpdraqivhrkcf<-*
                   +++  y+vW+GGS+LAs+++F + ++tk++YeE+G   ++i+++++    
     ah01423   236 MQR--YAVWFGGSMLASTPEFFQVCHTKKDYEEYG---PSICRHNPV    277  

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