hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-20210936/chunk_1/iprscan-20080806-20210936.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah01527 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.ls Ligand-gated ion channel 524.0 1.5e-154 1 PF00060.17.fs Ligand-gated ion channel 522.2 5.2e-154 1 PF01094.18.ls Receptor family ligand binding region 218.1 1.9e-62 1 PF01094.18.fs Receptor family ligand binding region 216.4 6e-62 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.fs 1/1 41 384 .. 1 421 [] 216.4 6e-62 PF01094.18.ls 1/1 41 384 .. 1 421 [] 218.1 1.9e-62 PF00060.17.fs 1/1 545 827 .. 1 304 [] 522.2 5.2e-154 PF00060.17.ls 1/1 545 827 .. 1 304 [] 524.0 1.5e-154 Alignments of top-scoring domains: PF01094.18.fs: domain 1 of 1, from 41 to 384: score 216.4, E = 6e-62 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd +++ lA +iN++++ l + +++v++++ + d+ ah01527 41 GERLSITLAKNRINRAPE-RLGKAKVEVDIFELLR----------DS 76 .aavaaaacllkskgVvaiiGPscss.vaiavarlanewgiPlisygata + +a ++c++ +kgVva++GPs+s ++++++++++e +P++ ah01527 77 eYETAETMCQILPKGVVAVLGPSSSPaSSSIISNICGEKEVPHFKV---- 122 pslsdkl.knryptfaR..tvpsdtkqgaAiadilkhtfgWkrvaviydd ++ + k +++ f+ ++ ps t+ + A+a il++ f+ +++ +i+ + ah01527 123 --APEEFvKFQFQRFTTlnLHPSNTDISVAVAGILNF-FNCTTACLICAK 169 ddydygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddf ++ l le++l+++ + + + +++ d+ ah01527 170 AEC----------LLNLEKLLRQFLISKDTL--------SVRMLDDTRDP 201 tallkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvw t llke++d +k+ i++++++++ + il++a elG+ s +Y + ah01527 202 TPLLKEIRD---DKTATIIIHANASMS----HTILLKAAELGMVSAYYTY 244 iltdlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaa i+t+l ++ + d +++ ah01527 245 IFTNLEFSL-------------------------------QRMDSLVDDR 263 kgvlgitlk.p.spefqeflerlkk.........sdtevnayallaYDAV +++lg+ + + ++ +fqef ++l+ + +++ ++ + t++ ++l++DAV ah01527 264 VNILGFSIFnQsHAFFQEFAQSLNQswqencdhvPFTGPALSSALLFDAV 313 yllAhAlnealrddpngtaglcnacrdsrvddasnalgglnlg.lmkw.d y+++ A++e++r+++ g+ +l ++g++ w++ ah01527 314 YAVVTAVQELNRSQEIGVKPL-------------------SCGsAQIWqH 344 GsqlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* G++l++ylr+ v+ eGltG++ f++ g+r +y l il+ ++ ah01527 345 GTSLMNYLRM-VELEGLTGHIEFNS-KGQRSNYALKILQFTR 384 PF01094.18.ls: domain 1 of 1, from 41 to 384: score 218.1, E = 1.9e-62 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd +++ lA +iN++++ l + +++v++++ + d+ ah01527 41 GERLSITLAKNRINRAPE-RLGKAKVEVDIFELLR----------DS 76 .aavaaaacllkskgVvaiiGPscss.vaiavarlanewgiPlisygata + +a ++c++ +kgVva++GPs+s ++++++++++e +P++ ah01527 77 eYETAETMCQILPKGVVAVLGPSSSPaSSSIISNICGEKEVPHFKV---- 122 pslsdkl.knryptfaR..tvpsdtkqgaAiadilkhtfgWkrvaviydd ++ + k +++ f+ ++ ps t+ + A+a il++ f+ +++ +i+ + ah01527 123 --APEEFvKFQFQRFTTlnLHPSNTDISVAVAGILNF-FNCTTACLICAK 169 ddydygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddf ++ l le++l+++ + + + +++ d+ ah01527 170 AEC----------LLNLEKLLRQFLISKDTL--------SVRMLDDTRDP 201 tallkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvw t llke++d +k+ i++++++++ + il++a elG+ s +Y + ah01527 202 TPLLKEIRD---DKTATIIIHANASMS----HTILLKAAELGMVSAYYTY 244 iltdlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaa i+t+l ++ + d +++ ah01527 245 IFTNLEFSL-------------------------------QRMDSLVDDR 263 kgvlgitlk.p.spefqeflerlkk.........sdtevnayallaYDAV +++lg+ + + ++ +fqef ++l+ + +++ ++ + t++ ++l++DAV ah01527 264 VNILGFSIFnQsHAFFQEFAQSLNQswqencdhvPFTGPALSSALLFDAV 313 yllAhAlnealrddpngtaglcnacrdsrvddasnalgglnlg.lmkw.d y+++ A++e++r+++ g+ +l ++g++ w++ ah01527 314 YAVVTAVQELNRSQEIGVKPL-------------------SCGsAQIWqH 344 GsqlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* G++l++ylr+ v+ eGltG++ f++ g+r +y l il+ ++ ah01527 345 GTSLMNYLRM-VELEGLTGHIEFNS-KGQRSNYALKILQFTR 384 PF00060.17.fs: domain 1 of 1, from 545 to 827: score 522.2, E = 5.2e-154 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp s vWl++l+ayl vs+vlflv+r ++Pyew+ p+pc++++ + ah01527 545 SPGVWLFMLLAYLAVSCVLFLVAR-LTPYEWYS---PHPCAQGR--C 585 eeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfFaLilis + ++nq++l+nslWF +g +mqQG+ ++Pr+lS+R+v+gvWw F+Li+is ah01527 586 NLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIIS 635 SYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkesk SYTANLAAFLTv+rm+ pIes++DLa+q+ ieYGt++ggs++tff++s ah01527 636 SYTANLAAFLTVQRMDVPIESVDDLADQT-AIEYGTIHGGSSMTFFQNSR 684 iptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmEs +ty+rmw+ym s++ Psvfvks+eeG++rV+n+ n yAFl Es ah01527 685 YQTYQRMWNYMYSKQ-----PSVFVKSTEEGIARVLNS--N--YAFLLES 725 tyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeLs t++ey+++rn C+Lt++G+ l++tkGYGI++p gS +rd+++lAIL+L+ ah01527 726 TMNEYYRQRN--CNLTQIGG-LLDTKGYGIGMPVGSVFRDEFDLAILQLQ 772 EsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvLa E++ le+L++KWw++ kCp+e++ + +++Lg+en++G+F++L++Gl++a ah01527 773 ENNRLEILKRKWWEGG-KCPKEED-HRAKGLGMENIGGIFVVLICGLIVA 820 llvalfE<-* ++ a +E ah01527 821 IFMAMLE 827 PF00060.17.ls: domain 1 of 1, from 545 to 827: score 524.0, E = 1.5e-154 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp s vWl++l+ayl vs+vlflv+r ++Pyew+ p+pc++++ + ah01527 545 SPGVWLFMLLAYLAVSCVLFLVAR-LTPYEWYS---PHPCAQGR--C 585 eeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfFaLilis + ++nq++l+nslWF +g +mqQG+ ++Pr+lS+R+v+gvWw F+Li+is ah01527 586 NLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIIS 635 SYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkesk SYTANLAAFLTv+rm+ pIes++DLa+q+ ieYGt++ggs++tff++s ah01527 636 SYTANLAAFLTVQRMDVPIESVDDLADQT-AIEYGTIHGGSSMTFFQNSR 684 iptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmEs +ty+rmw+ym s++ Psvfvks+eeG++rV+n+ n yAFl Es ah01527 685 YQTYQRMWNYMYSKQ-----PSVFVKSTEEGIARVLNS--N--YAFLLES 725 tyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeLs t++ey+++rn C+Lt++G+ l++tkGYGI++p gS +rd+++lAIL+L+ ah01527 726 TMNEYYRQRN--CNLTQIGG-LLDTKGYGIGMPVGSVFRDEFDLAILQLQ 772 EsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvLa E++ le+L++KWw++ kCp+e++ + +++Lg+en++G+F++L++Gl++a ah01527 773 ENNRLEILKRKWWEGG-KCPKEED-HRAKGLGMENIGGIFVVLICGLIVA 820 llvalfE<-* ++ a +E ah01527 821 IFMAMLE 827 //