hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20274360/chunk_1/iprscan-20080806-20274360.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah01627
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                224.4    2.4e-64   3
PF00046.19.fs Homeobox domain                                218.4    1.5e-62   3
PF00096.16.ls Zinc finger, C2H2 type                          96.1      1e-25   7
PF00096.16.fs Zinc finger, C2H2 type                          81.9    1.8e-21   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/7     175   199 ..     1    24 []    19.0    0.015
PF00096.16.ls   2/7     232   256 ..     1    24 []    26.2  0.00011
PF00096.16.fs   2/7     232   256 ..     1    24 []    24.3  8.5e-05
PF00046.19.ls   1/3     580   636 ..     1    57 []    70.9  3.7e-18
PF00046.19.fs   1/3     580   636 ..     1    57 []    68.9  1.5e-17
PF00096.16.ls   5/7     753   775 ..     1    24 []    24.3   0.0004
PF00046.19.fs   2/3     842   898 ..     1    57 []    73.1  8.4e-19
PF00046.19.ls   2/3     842   898 ..     1    57 []    75.1  2.1e-19
PF00046.19.ls   3/3    1050  1106 ..     1    57 []    78.4  2.1e-20
PF00046.19.fs   3/3    1050  1106 ..     1    57 []    76.4  8.3e-20

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 7, from 175 to 199: score 19.0, E = 0.015
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      ykC+ +C++sF++k  L  H ++ +H   
     ah01627   175    YKCT-VCKESFTQKNILLVHYNSvsH    199  

PF00096.16.ls: domain 2 of 7, from 232 to 256: score 26.2, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      +kC+ +C  s++++s+L+ H+r+  H   
     ah01627   232    FKCT-VCRVSYNQSSTLEIHMRSvlH    256  

PF00096.16.fs: domain 2 of 7, from 232 to 256: score 24.3, E = 8.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      +kC+ +C  s++++s+L+ H+r+  H   
     ah01627   232    FKCT-VCRVSYNQSSTLEIHMRSvlH    256  

PF00046.19.ls: domain 1 of 3, from 580 to 636: score 70.9, E = 3.7e-18
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RT ft  Q+++L+ +F+ + YP   e e+LA  LgL  r+V vW
     ah01627   580    RFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVW 626  

                   FQNRRaKwKk<-*
                   FQN R+K +k   
     ah01627   627 FQNARQKARK    636  

PF00046.19.fs: domain 1 of 3, from 580 to 636: score 68.9, E = 1.5e-17
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RT ft  Q+++L+ +F+ + YP   e e+LA  LgL  r+V vW
     ah01627   580    RFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVW 626  

                   FQNRRaKwKk<-*
                   FQN R+K +k   
     ah01627   627 FQNARQKARK    636  

PF00096.16.ls: domain 5 of 7, from 753 to 775: score 24.3, E = 0.0004
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  sFs+++ L++H+r H   
     ah01627   753    HTCD-QCAISFSSQDLLTSHRRLH    775  

PF00046.19.fs: domain 2 of 3, from 842 to 898: score 73.1, E = 8.4e-19
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +r RTt+ peQle+L + ++++++P+r++   ++++ gL +r+V+vW
     ah01627   842    KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVW 888  

                   FQNRRaKwKk<-*
                   FQN Ra+++k   
     ah01627   889 FQNTRARERK    898  

PF00046.19.ls: domain 2 of 3, from 842 to 898: score 75.1, E = 2.1e-19
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +r RTt+ peQle+L + ++++++P+r++   ++++ gL +r+V+vW
     ah01627   842    KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVW 888  

                   FQNRRaKwKk<-*
                   FQN Ra+++k   
     ah01627   889 FQNTRARERK    898  

PF00046.19.ls: domain 3 of 3, from 1050 to 1106: score 78.4, E = 2.1e-20
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      rr RT  ++ Ql++++++++  r+P+ +e e L +++gL++r+++vW
     ah01627  1050    RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVW 1096 

                   FQNRRaKwKk<-*
                   FQN RaK+Kk   
     ah01627  1097 FQNARAKEKK    1106 

PF00046.19.fs: domain 3 of 3, from 1050 to 1106: score 76.4, E = 8.3e-20
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      rr RT  ++ Ql++++++++  r+P+ +e e L +++gL++r+++vW
     ah01627  1050    RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVW 1096 

                   FQNRRaKwKk<-*
                   FQN RaK+Kk   
     ah01627  1097 FQNARAKEKK    1106 

//